1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gttcgtattttaacctaaaatatccgacttaaataacatttatttcaactgttgctttaaccaagtttggcgaacaacagAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG
species | Glycine max |
transcript | GLYMA17G02640.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: ATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAACTTGCTGCTAAG AGCATGACCCCGTCGAAGCGTTCCATGCCTAGACAGACTGAGAGEST: gi|23734541|gb|BU765507.1|BU765507
genomic: ATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAGgttcgtattt ... cgaacaacagAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAG
EST: ATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAG AGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCTEST: gi|13790494|gb|BG653094.1|BG653094
genomic: ATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAGgttcgtattt ... cgaacaacagAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCT
EST: ATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAG AGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCTEST: gi|6718901|gb|AW306548.1|AW306548
genomic: ATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAGgttcgtattt ... cgaacaacagAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCT
EST: ATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAG AGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCTEST: gi|31468447|gb|CD410475.1|CD410475
genomic: ATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAGgttcgtattt ... cgaacaacagAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCT
EST: ATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAG AGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCTEST: gi|193645408|gb|FK590824.1|FK590824
genomic: ATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAGgttcgtattt ... cgaacaacagAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCT
EST: ATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAG AGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGCGAGAGTCCATCTEST: gi|9984215|gb|BE658323.1|BE658323
genomic: ATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAGgttcgtattt ... cgaacaacagAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCT
EST: GGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAG AGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCTEST: gi|5666945|gb|AI930981.1|AI930981
genomic: GGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAGgttcgtattt ... cgaacaacagAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCT
EST: GGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAG AGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCT
genomic: GGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAGgttcgtattt ... cgaacaacagAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCT
gacttaaataacatttatttcaactgttgctttaaccaagtttggcgaacaacagAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG
aaataacatttatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtattttaacctaaaatatccgacttaaataacatttatttcaactgttgctttaaccaagtttggcgaacaacagAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA