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...agttattattacacttatatctaataatacacaactgctcatgacagttgttattggttcccataatttgcattcatagtttatattttttttgtttcagGCATGACAATGTGCAGATTTTGGAAAAGATGAGGCATTTGGTGTTATTCATTGAGCGAAATTTGGAAGAGAAG
species | Glycine max |
transcript | GLYMA16G30190.2 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: AGCTCTTCTAATCTTCCCAAAGGAGAATATATTTTACAGTTATATGTGAG GCATGACAATGTGCAGATTTTGGAAAAGATGAGGCATTTGGTGTTATTCATEST: gi|15813512|gb|BI785787.1|BI785787
genomic: AGCTCTTCTAATCTTCCCAAAGGAGAATATATTTTACAGTTATATTTGAGgtatatgtct ... tttgtttcagGCATGACAATGTGCAGATTTTGGAAAAGATGAGGCATTTGGTGTTATTCAT
EST: AGCTCTTCTAATCTTCCCAAAGGAGAATATATTTTACAGTTATATTTGAG GCATGACAATGTGCAGATTTTGGAAAAGATGAGGCATTTGGTGTTATTCATEST: gi|19453651|gb|BM955061.1|BM955061
genomic: AGCTCTTCTAATCTTCCCAAAGGAGAATATATTTTACAGTTATATTTGAGgtatatgtct ... tttgtttcagGCATGACAATGTGCAGATTTTGGAAAAGATGAGGCATTTGGTGTTATTCAT
EST: AGCTCTTCTAATCTTCCCAAAGGAGAATATATTTTACAGTTATATTTGAG GCATGACAATGTGCAGATTTTGGAAAAGATGAGGCATTTGGTGTTATTCATEST: gi|254334421|gb|GR844206.1|GR844206
genomic: AGCTCTTCTAATCTTCCCAAAGGAGAATATATTTTACAGTTATATTTGAGgtatatgtct ... tttgtttcagGCATGACAATGTGCAGATTTTGGAAAAGATGAGGCATTTGGTGTTATTCAT
EST: AGCTCTTCTAATCTTCCCAAAGGAGAATATATTTTACAGTTATATTTGAG GCATGACAATGTGCAGATTTTGGAAAAGATGAGGCATTTGGTGTTATTCAT
genomic: AGCTCTTCTAATCTTCCCAAAGGAGAATATATTTTACAGTTATATTTGAGgtatatgtct ... tttgtttcagGCATGACAATGTGCAGATTTTGGAAAAGATGAGGCATTTGGTGTTATTCAT
agttgttattggttcccataatttgcattcatagtttatattttttttgtttcagGCATGACAATGTGCAGATTTTGGAAAAGATGAGGCATTTGGTGTTATTCATTGAGCGAAATTTGGAAGAGAAG
tattttttttgtttc CT-rich tract
ataatttgcattcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttattattacacttatatctaataatacacaactgctcatgacagttgttattggttcccataatttgcattcatagtttatattttttttgtttcagGCATGACAATGTGCAGATTTTGGAAAAGATGAGGCATTTGGTGTTATTCATTGAGCGAAATTTGGAAGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - -caactgc
- - - - - - - - - - - - - - - - - - - tcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattca