1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...taaaaacaatatagcctctcaaatcatattttcagtatttggtgaagttgttagctgcttattattgcattaattactgagttatctttttttcatgcagACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTGGCAAAGGATATAAAGTGGGAAGATGATGGAGTGCTAGTTAGCTCTATTG
species | Glycine max |
transcript | GLYMA16G19560.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: AGCAACATCCTTTTT-CCGTGGAATCAATTGGCCTCTTATCCGCAACATG ACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTGEST: gi|27809437|gb|CB063859.1|CB063859
genomic: AGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATGgtaatattct ... tttcatgcagACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTG
EST: AGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATG ACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTGEST: gi|208157486|gb|GD955976.1|GD955976
genomic: AGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATGgtaatattct ... tttcatgcagACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTG
EST: AGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATG ACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTGEST: gi|6481668|gb|AW200939.1|AW200939
genomic: AGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATGgtaatattct ... tttcatgcagACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTG
EST: AGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATG ACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTGEST: gi|12690506|gb|BG156842.1|BG156842
genomic: AGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATGgtaatattct ... tttcatgcagACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTG
EST: AGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATG ACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTGEST: gi|193729552|gb|FK666066.1|FK666066
genomic: AGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATGgtaatattct ... tttcatgcagACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTG
EST: AGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATG ACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTG
genomic: AGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATGgtaatattct ... tttcatgcagACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTG
agttgttagctgcttattattgcattaattactgagttatctttttttcatgcagACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTGGCAAAGGATATAAAGTGGGAAGATGATGGAGTGCTAGTTAGCTCTATTG
cattaat putative branch site (score: 3)
ttatctttttttcat putative PPT
ttattattgcattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaaacaatatagcctctcaaatcatattttcagtatttggtgaagttgttagctgcttattattgcattaattactgagttatctttttttcatgcagACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTGGCAAAGGATATAAAGTGGGAAGATGATGGAGTGCTAGTTAGCTCTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- aaaacaa
- - - - - - - cctctca
- - - - - - - - - - - - - - - - - - -tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - -tagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgag