1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...cccccccccaaatacacaagaaacaccccaataagcaaataacctaatgttgttgcccatgattgctgatgaaaatgttatcttctctgctatgcaccagATTTATTCAACTTCGGGATGACTACAAGGCTGCCAAACTTGCGTCCAAACTAAGTTCCTTGTGGTCTTAACAAAATCCGGCTTGTGATCTAAAATCTTCG
species | Glycine max |
transcript | GLYMA16G01660.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: CTTTCAACTTTGTTTGAGGGCGCACCCAGCATACGGAAAGATGCACAAAG ATTTATTCAACTTCGGGATGACTACAAGGCTGCCAAACTTGCGTCCAAACTEST: gi|208307763|gb|GE105845.1|GE105845
genomic: CTTTCAACTTTGTTTGAGGGCACACCCAGCATACGGAAAGATGCACAAAGgtataactac ... tatgcaccagATTTATTCAACTTCGGGATGACTACAAGGCTGCCAAACTTGCGTCCAAACT
EST: CTTTCAACTTTGTTTGAGGGCACACCCAGCATACGGAAAGATGCACAAAG ATTTATTCAACTTCGGGATGACTACAAGGCTGCCAAACTTGCGTCCAAACTEST: gi|27427036|gb|CA938556.1|CA938556
genomic: CTTTCAACTTTGTTTGAGGGCACACCCAGCATACGGAAAGATGCACAAAGgtataactac ... tatgcaccagATTTATTCAACTTCGGGATGACTACAAGGCTGCCAAACTTGCGTCCAAACT
EST: CTTTCAACTTTGTTTGAGGGCACACCCAGCATACGGAAAGATGCACAAAG ATTTATTCAACTTCGGGATGACTACAAGGCTGCCAAACTTGCGTCCAAACTEST: gi|193441897|gb|FK407792.1|FK407792
genomic: CTTTCAACTTTGTTTGAGGGCACACCCAGCATACGGAAAGATGCACAAAGgtataactac ... tatgcaccagATTTATTCAACTTCGGGATGACTACAAGGCTGCCAAACTTGCGTCCAAACT
EST: CTTTCAACTATGTTTGAGGGCACACCCAGCATACGGAAAGATGCACAAAG ATTTATTCAACTTCGGGATGACTACAAGGCTGCCAAACTTGCGTCCAAACTEST: gi|10846431|gb|BF069328.1|BF069328
genomic: CTTTCAACTTTGTTTGAGGGCACACCCAGCATACGGAAAGATGCACAAAGgtataactac ... tatgcaccagATTTATTCAACTTCGGGATGACTACAAGGCTGCCAAACTTGCGTCCAAACT
EST: CTTTCAACTTTGTTTGAGGGCACACCCAGCATACGGAAAGATGCACAAAG ATTTATTCAACTTCGGGATGACTACAAGGCTGCCAAACTTGCGTCCAAACT
genomic: CTTTCAACTTTGTTTGAGGGCACACCCAGCATACGGAAAGATGCACAAAGgtataactac ... tatgcaccagATTTATTCAACTTCGGGATGACTACAAGGCTGCCAAACTTGCGTCCAAACT
aatgttgttgcccatgattgctgatgaaaatgttatcttctctgctatgcaccagATTTATTCAACTTCGGGATGACTACAAGGCTGCCAAACTTGCGTCCAAACTAAGTTCCTTGTGGTCTTAACAAAATCCGGCTTGTGATCTAAAATCTTCG
tgctgat putative branch site (score: 3)
ttatcttctctgct putative PPT
aaaatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccccccccaaatacacaagaaacaccccaataagcaaataacctaatgttgttgcccatgattgctgatgaaaatgttatcttctctgctatgcaccagATTTATTCAACTTCGGGATGACTACAAGGCTGCCAAACTTGCGTCCAAACTAAGTTCCTTGTGGTCTTAACAAAATCCGGCTTGTGATCTAAAATCTTCG
ccccccc
- - - - - -atacaca
- - - - - - - - - - - -cacccca
- - - - - - - - - - - - - - - - - - aaataacc
- - - - - - - - - - - - - - - - - - - - - - - - -ttgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat