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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttcttcctagctccctctctctctttgtttgtatatgttgtcgttatacttcattctattggctagtttttaacatgttatcttgtggcctgtagGATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTTGCGATTTTGAACAATTAATGGAATATTTCAATCCCTTGCTTCAGCGGTG

Basic information

species Glycine max
transcript GLYMA15G04850.1
intron # 23
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524524|gb|BU083335.1|BU083335
EST:     AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAG                         GATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
genomic: AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
EST: gi|207754880|gb|GD726899.1|GD726899
EST:     AGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAG                         GATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
genomic: AGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
EST: gi|193608231|gb|FK555212.1|FK555212
EST:     AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAG                         GATTGGAGGATGAAGTTATAGGGCATTCACGAAA
genomic: AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGGCATTCACGAAA
EST: gi|208210781|gb|GE011786.1|GE011786
EST:     AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAG                         GATTGGAGGATGAAGTTATAGGGCATTCACGAAAGTAACATGATGAATTCT
genomic: AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGGCATTCACGAAA-TA-CATGATGAATTCT
EST: gi|208184104|gb|GD981934.1|GD981934
EST:     AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTT-GAAAG                         GATTGGAGGATGAAGTTATAGGG
genomic: AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGG
EST: gi|207758023|gb|GD727761.1|GD727761
EST:     AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAG                         GATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
genomic: AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
EST: gi|207735390|gb|GD710233.1|GD710233
EST:     AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAG                         GATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
genomic: AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
EST: gi|207778265|gb|GD748828.1|GD748828
EST:     AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTT-GAAAG                         GATTGGAGGATGAAGTTATAGGG
genomic: AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgttatacttcattctattggctagtttttaacatgttatcttgtggcctgtagGATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTTGCGATTTTGAACAATTAATGGAATATTTCAATCCCTTGCTTCAGCGGTG
                           ttttaac  putative branch site (score: 2)
 tttttaacatgttat  TA-rich tract