1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...atctttaagttatatggtgtaaatcaattattttgttccattccatgaactttttatatttgcctgttaatttctcattggtattgattgtaatttgcagGCAATAGTTGTATTTGTGATAAGCATACATGCCTACGCTTATGATAAAAGTGAAATGGAGGAGGTTTCAATGGTTGCACTTTCCGGGTGTATATGGATAC
species | Glycine max |
transcript | GLYMA13G37090.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: CTGGATGGTTTGGGCGATCTCTCTTCCAT GCAATAGTTGTATTTGTGATAAGCATACATGCCTACGCTTATGATAAAAGTEST: gi|208148071|gb|GD944143.1|GD944143
genomic: CTGGATGGTTTGGGCGATCTCTCTTCCATgtaagtgttg ... taatttgcagGCAATAGTTGTATTTGTGATAAGCATACATGCCTACGCTTATGATAAAAGT
EST: TTCTAAATCCTAGTACATTTGCTGGATGGTTTGGGCGATCTCTCTTCCAT GCAATAGTTGTATTTGTGATAAGCATACATGCCTACGCTTATGATAAAAGTEST: gi|192300036|gb|FG991854.1|FG991854
genomic: TTCTAAATCCTAGTACATTTGCTGGATGGTTTGGGCGATCTCTCTTCCATgtaagtgttg ... taatttgcagGCAATAGTTGTATTTGTGATAAGCATACATGCCTACGCTTATGATAAAAGT
EST: TTCTAAATCCTAGTACATTTGCTGGATGGTTTGGGCGATCTCTCTTCCAT GCAATAGTTGTATTTGTGATAAGCATACATGCCTACGCTTATGATAAAAGT
genomic: TTCTAAATCCTAGTACATTTGCTGGATGGTTTGGGCGATCTCTCTTCCATgtaagtgttg ... taatttgcagGCAATAGTTGTATTTGTGATAAGCATACATGCCTACGCTTATGATAAAAGT
tgaactttttatatttgcctgttaatttctcattggtattgattgtaatttgcagGCAATAGTTGTATTTGTGATAAGCATACATGCCTACGCTTATGATAAAAGTGAAATGGAGGAGGTTTCAATGGTTGCACTTTCCGGGTGTATATGGATAC
tattgat putative branch site (score: 3)
tattgattgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctttaagttatatggtgtaaatcaattattttgttccattccatgaactttttatatttgcctgttaatttctcattggtattgattgtaatttgcagGCAATAGTTGTATTTGTGATAAGCATACATGCCTACGCTTATGATAAAAGTGAAATGGAGGAGGTTTCAATGGTTGCACTTTCCGGGTGTATATGGATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - tatggtg
- - - - - - - - - - - - - - - - - - -ccattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctgt