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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtattgtgcattatgtacatggtgaactttggttaactttattttgtggcaaatatgttattgctttaatggcttgttatatctgatcatgcaatcatagattcacctttccttttggttttgcagGTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAATAGTTACCATTTGACAGTTTGCCCAGGGCTT

Basic information

species Glycine max
transcript GLYMA12G30520.1
intron # 23
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307606|gb|FG999645.1|FG999645
EST:     CTTCCTGGACCACCTTTGAAACTTCAAGAAGTG                         GTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAAT
genomic: CTTCCTGGACCACCTTTGAAACTTCAAGAAGTGgtacgtattg ... ggttttgcagGTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAAT
EST: gi|21286017|gb|BQ473888.1|BQ473888
EST:     TTTGAAACTTCAAGAAGTG                         GTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAAT
genomic: TTTGAAACTTCAAGAAGTGgtacgtattg ... ggttttgcagGTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAAT
EST: gi|4283486|gb|AI440662.1|AI440662
EST:     TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTG                         GTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAAT
genomic: TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTGgtacgtattg ... ggttttgcagGTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAAT
EST: gi|10231964|gb|BE800852.1|BE800852
EST:     TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTG                         GTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAAT
genomic: TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTGgtacgtattg ... ggttttgcagGTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAAT
EST: gi|151404341|gb|EV274151.1|EV274151
EST:     TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTG                         GTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAAT
genomic: TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTGgtacgtattg ... ggttttgcagGTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAAT
EST: gi|51334703|gb|CO978569.1|CO978569
EST:     TGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTG                         GTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAAT
genomic: TGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTGgtacgtattg ... ggttttgcagGTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAAT
EST: gi|298170085|gb|HO018709.1|HO018709
EST:     TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTG                         GTCAGAGGTGTTAGACCCCTTCCACTGCTCGAGATGGCAAACTTATTCAAT
genomic: TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTGgtacgtattg ... ggttttgcagGTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgttatatctgatcatgcaatcatagattcacctttccttttggttttgcagGTCAGAGGTGTTAGACCCCTTCCACTGCTCGAAATGGCAAACTTATTCAATAGTTACCATTTGACAGTTTGCCCAGGGCTT
         atctgat  putative branch site (score: 4)
                              ttcacctttccttttg  putative PPT
     ttatatct  TA-rich tract