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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaatgattatatatcatttatagtgaatctgctaaacagcatgtataagcaagtattaaagggaatgatgatttgtgatatttgtaacttcttgtctagATATGGACTAGTACACTGCAACGAACAATTCTGACAGCCACTCCAATTGTTGGATTTCCCAAG

Basic information

species Glycine max
transcript GLYMA11G27410.1
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G27870.1 (Glycine max), 3'ss of exon 18
lower sequence: GRMZM2G021846_T02 (Zea mays), 3'ss of exon 17
tcaatgattatatatcatttatagtgaatctgctaaacagcatgtataagcaagtattaaagggaatgatgatttgtgatatttgtaacttcttgtctagATATGGACTAGTACACTGCAACGAACAATTCTGACAGCCACTCCAATTGTTGGATTTCCCAAG-------------------------------------
          ||  |  |||    ||| |      ||       | | | || | || | | ||  |||  |||||  ||  | | |     |||| ||||||||||| ||||| || ||  |||||||| ||||||| | ||||||||||||||| ||||||                                     
---------gtaagtattttcccatgattt-----aatgatggatctgacca-gcataacatgggctgaaaatttgcaattatcgaa-----ttgtttagATATGGACCAGTACCCTTCAGAGAACAATTTTGACAGCAAGTCCAATTGTTGGATTCCCCAAGGTATTTGGTTACACGATTTAGGAGTCTTCTTAAAGAA

upper sequence: GLYMA11G27870.1 (Glycine max), 3'ss of exon 18
lower sequence: GRMZM2G021846_T01 (Zea mays), 3'ss of exon 17
tcaatgattatatatcatttatagtgaatctgctaaacagcatgtataagcaagtattaaagggaatgatgatttgtgatatttgtaacttcttgtctagATATGGACTAGTACACTGCAACGAACAATTCTGACAGCCACTCCAATTGTTGGATTTCCCAAG
          ||  |  |||    ||| |      ||       | | | || | || | | ||  |||  |||||  ||  | | |     |||| ||||||||||| ||||| || ||  |||||||| ||||||| | ||||||||||||||| ||||||
---------gtaagtattttcccatgattt-----aatgatggatctgacca-gcataacatgggctgaaaatttgcaattatcgaa-----ttgtttagATATGGACCAGTACCCTTCAGAGAACAATTTTGACAGCAAGTCCAATTGTTGGATTCCCCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagcaagtattaaagggaatgatgatttgtgatatttgtaacttcttgtctagATATGGACTAGTACACTGCAACGAACAATTCTGACAGCCACTCCAATTGTTGGATTTCCCAAG
                                     ttgtaac  putative branch site (score: 2)
                                           cttcttgtct  CT-rich tract
      aagtattaaa  TA-rich tract