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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtactgtgagcttcatcaggaagttgtcattgtatttcatattttcatagtgctattctgagacactcatgttgttttctaatctttgtgtcagATATGTTGTGCAAAGGATGGACTCTGACCTCTGGGAGAAAGTTCTTAATCCTGAGAATGAGTTTAGGCGACAGTTGATTGATCAAGTGGTGTCTACTGCT

Basic information

species Glycine max
transcript GLYMA11G06720.1
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 23
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 23
--gtgtgtactgtgagcttcatcaggaagttgtcattgtatttcatattttcatagtgctattctgagacactcatgttgttttctaatctttgtgtcagATATGTTGTGCAAAGGATGGACTCTGACCTCTGGGAGAAAGTTCTTAATCCTGAGAATGAGTTTAGGCGACAGTTGATTGATCAAGTGGTGTCTACTGCT
   ||| ||   ||    |  | | || ||  |   |  |  | |    | || | |  ||||      |  | || || |    |  | ||  | | |||||||| ||| ||||||||||  |||||||||||||||||||||||| ||| || || |||| |||  | ||  | ||||||||||| || |||||||||
gtttgtttatcatgctgatggttaagaggtctttgcttcacataaagcctgcagatttttatt---gacctattattttttcccttttttttgttattagATATGTGGTGGAAAGGATGGATGCTGACCTCTGGGAGAAAGTTCTTAGTCCCGATAACGAGTATAGAAGGCAACTAATTGATCAAGTTGTATCTACTGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttcatagtgctattctgagacactcatgttgttttctaatctttgtgtcagATATGTTGTGCAAAGGATGGACTCTGACCTCTGGGAGAAAGTTCTTAATCCTGAGAATGAGTTTAGGCGACAGTTGATTGATCAAGTGGTGTCTACTGCT
                                     ttctaat  putative branch site (score: 2)
                                           tctttgt  CT-rich tract
                                   ttttctaat  TA-rich tract