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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatatgcaaattttagttgttaatacccttttatggaattatattgacacaatatttctacagGTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGATGCACAAGATAGATTATCTGAAATATTATCCGTGTAGAATGTTCTCTTT

Basic information

species Glycine max
transcript GLYMA10G35190.2
intron # 23
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207782752|gb|GD751481.1|GD751481
EST:     GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA                         GTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGA
genomic: GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGAgtaagtatat ... atttctacagGTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGA
EST: gi|26058666|gb|CA801580.1|CA801580
EST:     GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA                         GTATGCCAAGCTTCTT
genomic: GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGAgtaagtatat ... atttctacagGTATGCCAAGCTTCTT
EST: gi|51342395|gb|CO983470.1|CO983470
EST:     GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA                         GTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGA
genomic: GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGAgtaagtatat ... atttctacagGTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGA
EST: gi|15812288|gb|BI784563.1|BI784563
EST:     GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA                         GTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGA
genomic: GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGAgtaagtatat ... atttctacagGTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGA
EST: gi|51337373|gb|CO981239.1|CO981239
EST:     GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA                         GTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGA
genomic: GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGAgtaagtatat ... atttctacagGTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGA
EST: gi|254340255|gb|GR858380.1|GR858380
EST:     GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA                         GTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGA
genomic: GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGAgtaagtatat ... atttctacagGTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGA
EST: gi|254341252|gb|GR854980.1|GR854980
EST:     GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA                         GTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGA
genomic: GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGAgtaagtatat ... atttctacagGTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGA
EST: gi|13789586|gb|BG652177.1|BG652177
EST:     GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA                         GTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGA
genomic: GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGAgtaagtatat ... atttctacagGTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttagttgttaatacccttttatggaattatattgacacaatatttctacagGTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGATGCACAAGATAGATTATCTGAAATATTATCCGTGTAGAATGTTCTCTTT
                                 tattgac  putative branch site (score: 2)
                                            tatttct  putative PPT
                            aattatattgacacaa  TA-rich tract