1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtatgcaaacagcagtccaaatttatttttcagtacttcatttgaacatgctactgacaaaccttttctatttgcagGTAATCAACCCTGTTGCCAAGTCTGAGCCACTCTCTCTTGAAATGACTGACTCCTTGATAGTCATATCTGAGCTGGAAGGAGAGCAACCCGTTGTTTTGT
species | Glycine max |
transcript | GLYMA10G32300.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: CATATTTACGGAGAGAAGTAGCTATAGGATATGTGAAGAACAAGAAGAAT GTAATCAACCCTGTTGCCAAGTCTGAEST: gi|10255540|gb|BE823306.1|BE823306
genomic: CATATTTACGGAGAGAAGTAGCTATAGGATATGTGAAGAACAAGAAGAATgtatgcaaac ... ctatttgcagGTAATCAACCCTGTTGCCAAGTCTGA
EST: CATATTTACGGAGAGAAGTAGCTATAGGATATGTGAAGAACAAGAAGAAT GTAATCAACCCTGTTGCCAAGTCTGAGCCACTCTCTCTTGAAATGACTGACEST: gi|7042555|gb|AW472449.1|AW472449
genomic: CATATTTACGGAGAGAAGTAGCTATAGGATATGTGAAGAACAAGAAGAATgtatgcaaac ... ctatttgcagGTAATCAACCCTGTTGCCAAGTCTGAGCCACTCTCTCTTGAAATGACTGAC
EST: CATATTTACGGAGAGAAGTAGCTATAGGATATGTGAAGAACAAGAAGAAT GTAATCAACCCTGTTGCCAAGTCTGAGCCACTCTCTCTTGAAATGACTGACEST: gi|58023689|gb|CX710430.1|CX710430
genomic: CATATTTACGGAGAGAAGTAGCTATAGGATATGTGAAGAACAAGAAGAATgtatgcaaac ... ctatttgcagGTAATCAACCCTGTTGCCAAGTCTGAGCCACTCTCTCTTGAAATGACTGAC
EST: CATATTTACGGAGAGAAGTAGCTATAGGATATGTGAAGAACAAGAAGAAT GTAATCAACCCTGTTGCCAAGTCTGAGCCACTCTCTCTTGAAATGACTGACEST: gi|120493952|gb|EH222119.1|EH222119
genomic: CATATTTACGGAGAGAAGTAGCTATAGGATATGTGAAGAACAAGAAGAATgtatgcaaac ... ctatttgcagGTAATCAACCCTGTTGCCAAGTCTGAGCCACTCTCTCTTGAAATGACTGAC
EST: CATATTTACGGAGAGAAGTAGCTATAGGATATGTGAAGAACAAGAAGAAT GTAATCAACCCTGTTGCCAAGTCTGAGCCACTCTCTCTTGAAATGACTGAC
genomic: CATATTTACGGAGAGAAGTAGCTATAGGATATGTGAAGAACAAGAAGAATgtatgcaaac ... ctatttgcagGTAATCAACCCTGTTGCCAAGTCTGAGCCACTCTCTCTTGAAATGACTGAC
ttatttttcagtacttcatttgaacatgctactgacaaaccttttctatttgcagGTAATCAACCCTGTTGCCAAGTCTGAGCCACTCTCTCTTGAAATGACTGACTCCTTGATAGTCATATCTGAGCTGGAAGGAGAGCAACCCGTTGTTTTGT
tactgac putative branch site (score: 1)
ccttttctatttgc putative PPT
ttttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaaacagcagtccaaatttatttttcagtacttcatttgaacatgctactgacaaaccttttctatttgcagGTAATCAACCCTGTTGCCAAGTCTGAGCCACTCTCTCTTGAAATGACTGACTCCTTGATAGTCATATCTGAGCTGGAAGGAGAGCAACCCGTTGTTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA