Sequence
atgc intronic sequence ATGC exonic sequence...cttttgtcttcaatgtcattttctgtctatggtgttatacattttttcgtggcacattattcatttttcaagtttcatcttcaatttcctattgctgcagATTCCTGAAGAAGAGAAAAACCTTGGCTCGCATGATCGGTTGATCCATGTTTATCATTTCTTGAAAGACACAACTCAAAATCAG
Basic information
species | Glycine max |
transcript | GLYMA10G23680.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G23680.1 (Glycine max), 3'ss of exon 23
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 3'ss of exon 27
cttttgtcttcaatgtcatttt---ctgtctatggtgttatacattttttcg--tggcacattatt--cat----ttttcaagtttcat----cttcaatttcctattgctgcagATTCCTGAAGAAGAGAAAAACCTTGGCTCGCATGATCGGTTGATCCATGTTTATCATTTCTTGAAAGACACAACTCAAAATCAG
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-gttcgt-ttgaacatcttttctgactgacgatattgacataattccatttagttagtatactactgtcattatattattgatttgcataacatttttgctaccaattgaaacagATACCAGAGGAAGAGAAGAACCTTGGCCCACATGATCGGTTGATTCATGTTTACCATTTCATGAAAGATCCTAATCAAAATCAG
upper sequence: GLYMA10G23680.1 (Glycine max), 3'ss of exon 23
lower sequence: GRMZM2G014805_T01 (Zea mays), 3'ss of exon 27
-----------------------------------------cttttgtcttcaatgt-cattttctgtctatggtgttatacattttttcgtggcacattattcatttttcaagtttcatcttcaatttcctattgctgcagATTCCTGAAGAAGAGAAAAACCTTGGCTCGCATGATCGGTTGATCCATGTTTATCATTTCTTGAAAGACACAACTCAAAATCAG----------------
|| | | || | || | | | | | | | || | | | | | || || || | | | | | | ||| |||||||| || |||||||| || |||||| | ||||| || ||||| |||||||||||||| |||||||| | | ||| ||||||
gttcgtattatttcattttcttgatgttgaccctttgacctattctattgaaaaaatacaactaatttatgtagattaatctgcgatacttctgtatagttgtcgattgtcgtgcatgacactactgtcaattttgaaacagATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCGTTTGATTCATGTTTATCATTTTATGAAAGACCCTAATCAGAATCAGCAGATTCAGAATTTCG
upper sequence: GLYMA10G23680.1 (Glycine max), 3'ss of exon 23
lower sequence: Vv13s0073g00610.t01 (Vitis vinifera), 3'ss of exon 27
cttttgtcttcaatgtcattttctgtctatggtgttatacattttttcgtggcacattattcatttttcaagtttcatcttcaatt-tcctattgctgcagATTCCTGAAGAAGAGAAAAACCTTGGCTCGCATGATCGGTTGATCCATGTTTATCATTTCTTGAAAGACACAACTCAAAATCAG---
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-ttaccagatcaaccatccactttgactctttagacctgattgttatagcaaatcagtaggagggtttcaagtagttttttaacttgtttctttactacagATTCCTGAAGAGGAGAAAAACCTAGGTCCTCATGATCGGTTGATTCATGTTTATCATTTTATGAAAGACACAACTCAGAATCAGGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcgtggcacattattcatttttcaagtttcatcttcaatttcctattgctgcagATTCCTGAAGAAGAGAAAAACCTTGGCTCGCATGATCGGTTGATCCATGTTTATCATTTCTTGAAAGACACAACTCAAAATCAG
tttcctatt CT-rich tract
attattcatttttcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttttgtcttcaatgtcattttctgtctatggtgttatacattttttcgtggcacattattcatttttcaagtttcatcttcaatttcctattgctgcagATTCCTGAAGAAGAGAAAAACCTTGGCTCGCATGATCGGTTGATCCATGTTTATCATTTCTTGAAAGACACAACTCAAAATCAG
- - - - - caatgtc
- - - - - - - - - - ttctgtc
- - - - - - - - - - - - - -tatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcttc