1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
gtgagcatgttatgtttaatgttaacttgtattttcatgttttacagatgacatctattctaatgcatggtctgacttcattttttttttgtagATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTCATTTTAGTGAAAGAAGATTTGGCACCTGACGTTGATTTTGAAGCAATA
species | Glycine max |
transcript | GLYMA10G02400.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACG ATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTTTCAGAGTEST: gi|24135420|gb|BU925930.1|BU925930
genomic: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGgtgagcatgt ... ttttttgtagATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGT
EST: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACG ATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTEST: gi|19347186|gb|BM892066.1|BM892066
genomic: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGgtgagcatgt ... ttttttgtagATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGT
EST: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACG ATTGATGGTTAATTTGCCAGATGCTCCAAAEST: gi|58019392|gb|CX706134.1|CX706134
genomic: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGgtgagcatgt ... ttttttgtagATTGATGGTTAATTTGCCAGATGCTCCAAA
EST: TGTTATTAGGAGGCTTCCTCGACG ATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTEST: gi|37994806|gb|CF806395.1|CF806395
genomic: TGTTATTAGGAGGCTTCCTCGACGgtgagcatgt ... ttttttgtagATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGT
EST: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACG ATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTEST: gi|15814532|gb|BI786807.1|BI786807
genomic: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGgtgagcatgt ... ttttttgtagATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGT
EST: GCTTCCTCGACG ATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTEST: gi|26057754|gb|CA800668.1|CA800668
genomic: GCTTCCTCGACGgtgagcatgt ... ttttttgtagATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGT
EST: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACG ATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTEST: gi|192316471|gb|FK009296.1|FK009296
genomic: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGgtgagcatgt ... ttttttgtagATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGT
EST: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACG ATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTEST: gi|192312529|gb|FK005001.1|FK005001
genomic: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGgtgagcatgt ... ttttttgtagATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGT
EST: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACG ATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTEST: gi|20811998|gb|BQ296476.1|BQ296476
genomic: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGgtgagcatgt ... ttttttgtagATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGT
EST: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACG ATT-ATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTEST: gi|192312514|gb|FK005000.1|FK005000
genomic: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGgtgagcatgt ... ttttttgtagATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGT
EST: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACG ATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGT
genomic: AACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGgtgagcatgt ... ttttttgtagATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGT
ttttacagatgacatctattctaatgcatggtctgacttcattttttttttgtagATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTCATTTTAGTGAAAGAAGATTTGGCACCTGACGTTGATTTTGAAGCAATA
cttcattttttttttg CT-rich tract
ttcattttttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcatgttatgtttaatgttaacttgtattttcatgttttacagatgacatctattctaatgcatggtctgacttcattttttttttgtagATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTCATTTTAGTGAAAGAAGATTTGGCACCTGACGTTGATTTTGAAGCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA