1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gttagcctcagttcaatgtgttgcgtaaataatttcatttataatatttttatctgataccaatggcatcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTGATAGCCAGCTGGTATTTGCCAGCTTTTTAGATGCAACAATCTGTGTAT
species | Glycine max |
transcript | GLYMA08G22910.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|14999140|gb|BI320223.1|BI320223
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGEST: gi|27427240|gb|CA938760.1|CA938760
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTG
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|23725389|gb|BU760648.1|BU760648
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|6963505|gb|AW432198.1|AW432198
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|10845152|gb|BF068313.1|BF068313
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|15812260|gb|BI784535.1|BI784535
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|19054194|gb|BM732861.1|BM732861
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|11687500|gb|BF595176.1|BF595176
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|10239010|gb|BE807898.1|BE807898
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|207824854|gb|GD796790.1|GD796790
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTCCCCGCGAGACTCATTTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|7233186|gb|AW568535.1|AW568535
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|151396060|gb|EV265937.1|EV265937
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAGGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|15201627|gb|BI424973.1|BI424973
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: GCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|26048827|gb|CA785280.1|CA785280
genomic: GCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|48574833|gb|CO036100.1|CO036100
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: AAACTCAGCTCACCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTEST: gi|193388224|gb|FK353907.1|FK353907
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGT
EST: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAG TGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTT-CTCAT
genomic: AAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGgttagcctca ... tcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCAT
cgtaaataatttcatttataatatttttatctgataccaatggcatcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTGATAGCCAGCTGGTATTTGCCAGCTTTTTAGATGCAACAATCTGTGTAT
atctgat putative branch site (score: 4)
ataatttcatttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcctcagttcaatgtgttgcgtaaataatttcatttataatatttttatctgataccaatggcatcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTGATAGCCAGCTGGTATTTGCCAGCTTTTTAGATGCAACAATCTGTGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG