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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcaatatctatcacatggaataacctggtactgagttgtttcattgccttctggtacccagaatgaggtgatatgctgttcatgtgcaaatatgcagGTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGCCATACTAG

Basic information

species Glycine max
transcript GLYMA08G04510.1
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04510.1 (Glycine max), 3'ss of exon 23
lower sequence: AT1G49040.1 (Arabidopsis thaliana), 3'ss of exon 23
-------gtaagtttcaatatctatcacatggaataacctggtactgagttgtttcattgccttctggtacccagaatgaggtgatatgctgttcatgtgcaaatatgcagGTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGCCATACTAG
         |  | |  | || ||   |  || | | | |  ||| || | ||   ||  |  ||| | | ||    |  | || |      | |   || |  |  ||||||||| || |||||||| ||||| ||||||||||||||  | |||||||| ||||| |||||| |
cacactttcatttcttgaaatttagatcgaggtaaaccttaatacagaatggt--aatgacaatctagcatccccttttggttgct------tcc---tgaatttgagcagGTTAAAATTTGGGATCCAAGTCTGCGTGGTTCTGAACTTCGAGCAACTTTGAAAGGACATACTGG

upper sequence: GLYMA08G04510.1 (Glycine max), 3'ss of exon 23
lower sequence: Vv17s0000g03950.t01 (Vitis vinifera), 3'ss of exon 23
gtaagtttcaatatctatcacatggaata-acctggtactgagttgtttcattgccttctggtacccagaatgaggtgatatgctgttcatgtgcaaatatgcagGTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGCCATACTAG
  || || ||||    |  ||||  | |  |    | | | |  ||   || ||   |     | |  |   | ||| ||    | ||  |    || | ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||| | 
--aacttccaatgatcaatacataaattctataaagcattaaactgcagcactggaatagaaaagcatg---gtggttatcatttttttttccataactgtgcagGTGAAGATCTGGGATCCTACTCTTCGTGGTTCTGAACTTAGGGCAACTTTGAAAGGACATACAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207684563|gb|GD667042.1|GD667042
EST:     GTGACCGTGAAGATGCTGGTTTTTT-ATTAGTGGAAGCACCGACTGCTCA                         GTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTA
genomic: GTGACCGTGAAGATGCTGGTTTTTTTATTAGTGGAAGCACCGACTGCTCAgtaagtttca ... aaatatgcagGTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgccttctggtacccagaatgaggtgatatgctgttcatgtgcaaatatgcagGTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGCCATACTAG
                                             aaatat  TA-rich tract