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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgattggagtttcatttcctctttccagtcatagactcttccccttcccccattttaaaccattctcagttatattttgtaatttgttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCTGTTCGTGTTGGACAAGCCGTAGATGTTGTTGGACAAGCAGGTCGTCCGA

Basic information

species Glycine max
transcript GLYMA06G44340.1
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G44340.1 (Glycine max), 3'ss of exon 23
lower sequence: AT2G20580.1 (Arabidopsis thaliana), 3'ss of exon 21
----gtttgattggagtttcat-ttcctctttccagtcatagactcttccccttcccccattttaaacc-attctcagttatattttgt-aatttgttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCTGTTCGTGTTGGACAAGCCGTAGATGTTGTTGGACAAGCAGGTCGTCCGA
    |||  | |   ||    | || |||  ||  ||  |||     ||   |   |    | | |    ||  | | | | ||||||| ||     || || ||||||||||| ||||||| |||||||| ||| ||||||| ||||||||||| || || || |||||||| || ||||| ||||| ||||| ||||| || |
gtgagttcaacttctgtcctgtgtttctccctcttgt--tagttaggtctgatgaacttgctatgatttgatatttaatcaaattttgttaaaaaaatgtat-agCCAAGGATGATGTTGACAGTGGATGAAAACCTGAAGCCACTGTCAGTGCCAGTGCGGGTAGGACAAGCAGTTGATGTGGTTGGGCAAGCGGGTCGGCCCA

upper sequence: GLYMA06G44340.1 (Glycine max), 3'ss of exon 23
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 3'ss of exon 23
gtttgattggagttt---catttcctctttccagtcatagactcttccccttcccccattttaaacc-attctcagttatattt-tgtaatttgttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCTGTTCGTGTTGGACAAGCCGTAGATGTTGTTGGACAAGCAGGTCGTCCGA
|||   |   | |||   || ||| | | || |    | |   |      ||     || ||      ||||| | |  ||||| | || |||| |||  |||||||| |||||| |||||||||||||| |  | || |||||||| || ||||| || || || || || || |||||||||||||| || ||||| || |
gttaattctaaatttgagcacttcatttctctacaatttgtgaccatttgtttttggatcttgtgtttattcttactgttatttatctactttgatgctacagCCAAGAATGTTGATGACTGTGGATGAGGATCTAAAACCTCTGTCTGTACCTGTACGGGTGGGTCAGGCTGTGGATGTTGTTGGACAGGCTGGTCGGCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31462296|gb|CD404324.1|CD404324
EST:     TGCTGGGAANATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|46492855|gb|CN472411.1|CN472411
EST:     TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|10237756|gb|BE806644.1|BE806644
EST:     TGCTGGGAAAATATCACTATGTTCTCTTCTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|208173719|gb|GD970326.1|GD970326
EST:     TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|193490148|gb|FK453719.1|FK453719
EST:     TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGT
EST: gi|10234169|gb|BE803057.1|BE803057
EST:     TGCTGGGAAAAT-TCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|120492692|gb|EH220859.1|EH220859
EST:     TGCTGGGAAAATATCACTATGCTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|6747639|gb|AW318152.1|AW318152
EST:     TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|120530034|gb|EH258168.1|EH258168
EST:     TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|10237376|gb|BE806264.1|BE806264
EST:     GTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: GTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|42722474|gb|CK768373.1|CK768373
EST:     TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccccttcccccattttaaaccattctcagttatattttgtaatttgttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCTGTTCGTGTTGGACAAGCCGTAGATGTTGTTGGACAAGCAGGTCGTCCGA
                           agttatattttgtaat  TA-rich tract