Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatccctttgcctgctttagttttattttattattcttatctagttttgatattaaatctctttaaaatcttttcagATAAGAGAAGAGCCTCCGTCATACTCATCCTCTGTCATACAAAGACACGAGTCATTTGAGAACCCCCTAGCAGGGAATGGATCACATAGTTTTGGGTCTC

Basic information

species Glycine max
transcript GLYMA05G36530.1
intron # 23
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335525|gb|CO979391.1|CO979391
EST:     ATAAGGCACCAGCAAGCCGAGGCTTTACGTATGAAGGTTATGGTTCTCCA                         ATAAGAGAAGAGCCTCCGTCATACTCATCCTCTGTCATACAAAGACACGAG
genomic: ATAAGGCACCAGCAAGCCGAGGCTTTACGTATGAAGGTTATGGTTCTCCAgtaagatccc ... atcttttcagATAAGAGAAGAGCCTCCGTCATACTCATCCTCTGTCATACAAAGACACGAG
EST: gi|7924509|gb|AW830535.1|AW830535
EST:     ATAAGGCACCAGCAAGCCGAGGCTTTACGTATGAAGGTTATGGTTCTCCA                         ATAAGAGAAGAGCCTCCGTCATACTCATCCTCTGTCATACAAAGACACGAG
genomic: ATAAGGCACCAGCAAGCCGAGGCTTTACGTATGAAGGTTATGGTTCTCCAgtaagatccc ... atcttttcagATAAGAGAAGAGCCTCCGTCATACTCATCCTCTGTCATACAAAGACACGAG
EST: gi|151398994|gb|EV268865.1|EV268865
EST:     ATAAGGCACCAGCAAGCCGAGGCTTTACGTATGAAGGTTATGGTTCTCCA                         ATAAGAGAAGAGCCTCCGTCATACTCATCCTCTGTCATACAAAGACACGAG
genomic: ATAAGGCACCAGCAAGCCGAGGCTTTACGTATGAAGGTTATGGTTCTCCAgtaagatccc ... atcttttcagATAAGAGAAGAGCCTCCGTCATACTCATCCTCTGTCATACAAAGACACGAG
EST: gi|16344465|gb|BI970060.1|BI970060
EST:     ATAAGGCACCAGCAAGCCGAGGCTTTACGTATGAAGGTTATGGTTCTCCA                         ATAAGAGAAGAGCCTCCGTCATACTCATCCTCTGTCATACAAAGACACGAG
genomic: ATAAGGCACCAGCAAGCCGAGGCTTTACGTATGAAGGTTATGGTTCTCCAgtaagatccc ... atcttttcagATAAGAGAAGAGCCTCCGTCATACTCATCCTCTGTCATACAAAGACACGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttattattcttatctagttttgatattaaatctctttaaaatcttttcagATAAGAGAAGAGCCTCCGTCATACTCATCCTCTGTCATACAAAGACACGAGTCATTTGAGAACCCCCTAGCAGGGAATGGATCACATAGTTTTGGGTCTC
                      ttttgat  putative branch site (score: 4)
                                              tcttttc  putative PPT
     ttattattcttatcta  TA-rich tract