Sequence
atgc intronic sequence ATGC exonic sequencegtaagttaccttttagacattttgttactgttgctctctaacatcgatattgtgccagttccgaatctgttaatgttggcacactctgcccaagtttcttactcgaatttccttcatttggattagAAAGTTGAAAACAGAGTGAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAAC
Basic information
| species | Glycine max |
| transcript | GLYMA03G03120.1 |
| intron # | 23 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G03120.2 (Glycine max), 3'ss of exon 23
lower sequence: LOC_Os02g51430.1 (Oryza sativa), 3'ss of exon 22
------------------------------------------------------------------gtaagttac-cttttagacattttg--ttactgttgct-ctctaacatcgatattgtgccagttccgaatctgttaatgttggcacactctgcccaagtttcttactcgaat--ttccttcatttgga---ttagAAAGTTGAAAACAGAGTGAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAAC
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gtaagtatacttgcaacttccattcatgtggctttcattcaaagtccaagctacccacgataccatgtattttgtgctattgtataattaaactggattttacaattttagcatcgaacatctgt-aatcctagacttttcttcacaaatgcttatttgttggttctgtaactttaaccactctatgattttgtgctccagAAAGTTGAAACCAGAGTGCGGATTCTGGCTGATCTAAGGGAGCTTGCTTCAGCTGAGAGTCTGGATAGTTTTACTCTCATTTATACAAATATTCTGGAAC
upper sequence: GLYMA03G03120.2 (Glycine max), 3'ss of exon 23
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 3'ss of exon 22
gtaagt--taccttttagacattttgttactgttgct-ctctaacatcgatattgtgccagttccgaatctgttaatgttggcacactctgcccaagtttcttactcga-atttccttcatttggat----tagAAAGTTGAAAACAGAGTGAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAAC
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gtaagtgccaccaccttgacttaagtttactagaaatacagttacctcaatattttttctagtgtaattttcttgatctattcatctgcaatgcttcttacttcctccacatttccttgacttatgtgttacagAAAGTTGAAAACAGAGTCAGGATACTGAGTGACTTGAGAGAGCTTGCTTCCGCAGAGAGCCTGGATACTTTCACACTCATCTACACAAACATTCTTGAAC
upper sequence: GLYMA03G03120.2 (Glycine max), 3'ss of exon 23
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 22
gtaagt--taccttttagacattttgttact-gttgctctctaacatcgatattgtgccagttccgaatctgttaatgttggcacactctgcccaagtttcttactcga-atttccttcatttggat----tagAAAGTTGAAAACAGAGTGAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAAC
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gtaagtgccaccaccttgacttaagtttactcgaaatacagttacctcaacattttttctagtataattttcttgatgtattcatctgctatgcttcttacttcctccatatttccttgacttatgtgttacagAAAGTTGAAAACAGAGTCAGGATACTGAGTGACTTGAGAGAGCTTGCTTCTGCAGAGAGCCTGGATACATTCACACTCATATACACAAACATTCTTGAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151398921|gb|EV268792.1|EV268792EST: TAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCT AAAGTTGAAAACAGAGTGAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCA
genomic: TAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCTgtaagttacc ... tttggattagAAAGTTGAAAACAGAGTGAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatgttggcacactctgcccaagtttcttactcgaatttccttcatttggattagAAAGTTGAAAACAGAGTGAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAAC
ttcttac putative branch site (score: 2)
tttccttcattt putative PPT
tttctta TA-rich tract
