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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtgtactatccttcattaaggtgtcattgtatttcatcatgttagtttgggacactcatgctatttctttttgtttgtatcagATATGTTGTGGAACGTATGAATGCTGACCTCTGGGAGAAAGTTCTTAATCCCGAGAATGAGTTTAGAAGACAGTTGATTGATCAAGTGGTGTCCACTGCT

Basic information

species Glycine max
transcript GLYMA02G39360.1
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G39360.1 (Glycine max), 3'ss of exon 23
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 23
gtgtgtgtactatcct--tcattaaggtgtcattgtatttcat--------catgttagtttgggacactcatgctatttctttttgtttgtatcagATATGTTGTGGAACGTATGAATGCTGACCTCTGGGAGAAAGTTCTTAATCCCGAGAATGAGTTTAGAAGACAGTTGATTGATCAAGTGGTGTCCACTGCT
|| ||| ||  || ||  |  |||||  ||| |||  |  |||        ||  ||  | | |  |  | ||  | |  |||||| ||  ||| |||||||| |||||| | ||| ||||||||||||||||||||||||||| |||||| || |||| |||||| ||  | ||||||||||| || || ||||||
gtttgtttatcatgctgatggttaagaggtctttgcttcacataaagcctgcagatttttattgacctattattttttcccttttttttgttattagATATGTGGTGGAAAGGATGGATGCTGACCTCTGGGAGAAAGTTCTTAGTCCCGATAACGAGTATAGAAGGCAACTAATTGATCAAGTTGTATCTACTGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193561398|gb|FK518951.1|FK518951
EST:     GAGC-TGTTAATGTTTCCAATAAAAATTCCTTGTTCAAACTCCAAGCCAG                         ATATGTTGTGGAACGTATGAATGCTGACCTCTGGGAGAAAGTTCTTAATCC
genomic: GAGCTTGTTAATGTTTCCAATAAAAATTCCTTGTTCAAACTCCAAGCCAGgtgtgtgtac ... tttgtatcagATATGTTGTGGAACGTATGAATGCTGACCTCTGGGAGAAAGTTCTTAATCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatttcatcatgttagtttgggacactcatgctatttctttttgtttgtatcagATATGTTGTGGAACGTATGAATGCTGACCTCTGGGAGAAAGTTCTTAATCCCGAGAATGAGTTTAGAAGACAGTTGATTGATCAAGTGGTGTCCACTGCT
                                ctatttctttttgttt  CT-rich tract
                                 tatttctttttgttt  TA-rich tract