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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcaagctgtctttttattgctatttcaatactactattttattgcaaacaaagtattaacacaatgtttactactcaagGCGTATTCTCCATGATGATAGTCGAGGAGTTGGGGAACCACTTGATGAACAAGTTTGCGTGAACAACAATAATACATGTGAAGGACTAACA

Basic information

species Glycine max
transcript GLYMA02G05240.1
intron # 23
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10709426|gb|BF009150.1|BF009150
EST:     CTGGTGGAGCCAGCATCAAAGATGGTGAGGTGGAATTGATTGCT-CATAN                         GCGTATTCTCCATGATGATAGTCGAGGAGTTGGGGAAC-ACTTGATGAAC
genomic: CTGGTGGAGCCAGCATCAAAGATGGTGAGGTGGAATTGAT-GCTTCATAGgtattcaagc ... actactcaagGCGTATTCTCCATGATGATAGTCGAGGAGTTGGGGAACCACTTGATGAAC
EST: gi|58021123|gb|CX707865.1|CX707865
EST:     CT-GTGGGAGCCAGCATCAAAGATGGTGAGGTGGAATTGATGCTTCATAG                         GCGTATTCTCCATGATGATAGTCGAGGAGTTGGGGAACCACTTGATGAACA
genomic: CTGGT-GGAGCCAGCATCAAAGATGGTGAGGTGGAATTGATGCTTCATAGgtattcaagc ... actactcaagGCGTATTCTCCATGATGATAGTCGAGGAGTTGGGGAACCACTTGATGAACA
EST: gi|51338433|gb|CO982299.1|CO982299
EST:     AGCCAGCATCAAAGATGGTGAGGTGGAATTGATGNNTCATAG                         GCGTATNNTCCATGATGATAGTCGAGGAGTTGGGGAACCACTTGATGAACA
genomic: AGCCAGCATCAAAGATGGTGAGGTGGAATTGATGCTTCATAGgtattcaagc ... actactcaagGCGTATTCTCCATGATGATAGTCGAGGAGTTGGGGAACCACTTGATGAACA
EST: gi|58017781|gb|CX704523.1|CX704523
EST:     ACTGGTGGAGCCAGCATCAAAGATGGTGAGGTGGAATTGATGCTTCATAG                         GCGTATTCTCCATGATGATAGTCGAGGAGTTGGGGAACCACTTGATGAACA
genomic: ACTGGTGGAGCCAGCATCAAAGATGGTGAGGTGGAATTGATGCTTCATAGgtattcaagc ... actactcaagGCGTATTCTCCATGATGATAGTCGAGGAGTTGGGGAACCACTTGATGAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatactactattttattgcaaacaaagtattaacacaatgtttactactcaagGCGTATTCTCCATGATGATAGTCGAGGAGTTGGGGAACCACTTGATGAACAAGTTTGCGTGAACAACAATAATACATGTGAAGGACTAACA
                             tattaac  putative branch site (score: 1)
     actactattttatt  TA-rich tract