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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtactgtgagcttcagcaggaagttgtcattgtatttcatatttttataatgctagtctgagacactcatgttattttctaatgtttgtgtcagATATGTTGTCGAAAGGATGGACTCCGACCTCTGGGAGAAAGTTCTTAATCCTGAGAATGAGTTTAGACGACTGTTGATTGATCAAGTGGTGTCTACTGCT

Basic information

species Glycine max
transcript GLYMA01G38580.1
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 23
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 23
--gtgtgtactgtgagcttcagcaggaagttgtcattgtatttcatatttttataatgctagtctgagacactcatgttattttctaatgtttgtgtcagATATGTTGTCGAAAGGATGGACTCCGACCTCTGGGAGAAAGTTCTTAATCCTGAGAATGAGTTTAGACGACTGTTGATTGATCAAGTGGTGTCTACTGCT
   ||| ||   ||    |    | || ||  |   |  |  | |    |  | | |  ||   |||   | | || || |    |  | ||  | | |||||||| || |||||||||||  | |||||||||||||||||||||| ||| || || |||| |||| | |   | ||||||||||| || |||||||||
gtttgtttatcatgctgatggttaagaggtctttgcttcacataaagcctgcagattttta--ttgaccta-ttattttttcccttttttttgttattagATATGTGGTGGAAAGGATGGATGCTGACCTCTGGGAGAAAGTTCTTAGTCCCGATAACGAGTATAGAAGGCAACTAATTGATCAAGTTGTATCTACTGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193544457|gb|FK499786.1|FK499786
EST:     GAGCTTGTTAATGTTACTAATAAAAATTCCTTGTTCAAACTTCAAGCAAG                         ATATGTTGTCGAAAGGATGGACTCCGACCTCTGGGAGAAAGTTCTTAATCC
genomic: GAGCTTGTTAATGTTACTAATAAAAATTCCTTGTTCAAACTTCAAGCAAGgtgtgtactg ... tttgtgtcagATATGTTGTCGAAAGGATGGACTCCGACCTCTGGGAGAAAGTTCTTAATCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttttataatgctagtctgagacactcatgttattttctaatgtttgtgtcagATATGTTGTCGAAAGGATGGACTCCGACCTCTGGGAGAAAGTTCTTAATCCTGAGAATGAGTTTAGACGACTGTTGATTGATCAAGTGGTGTCTACTGCT
                                     ttctaat  putative branch site (score: 2)
                                ttattttctaatgttt  TA-rich tract