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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

agttggtcaccttttgctataaaactacttgttatactatcttcatgattttcttacttacggatgagagtgagtttcaGGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTATCCAAGGGCTTATAGAATTGATCACGACCGAGATGCAGAGTGACTCTGC

Basic information

species Glycine max
transcript GLYMA17G37870.1
intron # 22
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411598|gb|EV281409.1|EV281409
EST:     AGCAAGGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACA                         AGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTA
genomic: AGCAAGGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAagttggtcac ... gtgagtttcaGGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTA
EST: gi|208212149|gb|GE008786.1|GE008786
EST:     GGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACA                         AGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTA
genomic: GGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAagttggtcac ... gtgagtttcaGGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTA
EST: gi|208155132|gb|GD956283.1|GD956283
EST:     GGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACA                         AGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTA
genomic: GGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAagttggtcac ... gtgagtttcaGGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTA
EST: gi|207844058|gb|GD815195.1|GD815195
EST:     GTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACA                         AGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTA
genomic: GTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAagttggtcac ... gtgagtttcaGGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTA
EST: gi|193524527|gb|FK483126.1|FK483126
EST:     GTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACA                         AGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTA
genomic: GTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAagttggtcac ... gtgagtttcaGGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTA
EST: gi|193435546|gb|FK399374.1|FK399374
EST:     AGGGGTAGGCTAGTTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACA                         AGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTA
genomic: AGGGGTA-GC-AG-TGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAagttggtcac ... gtgagtttcaGGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTA
EST: gi|193331276|gb|FK292834.1|FK292834
EST:     GGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACA                         AGTACATTTACTATTTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACT
genomic: GGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAagttggtcac ... gtgagtttcaGGTACATTTACTA-TTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACT
EST: gi|208258313|gb|GE056300.1|GE056300
EST:     GGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACA                         AGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTA
genomic: GGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAagttggtcac ... gtgagtttcaGGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacttgttatactatcttcatgattttcttacttacggatgagagtgagtttcaGGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTATCCAAGGGCTTATAGAATTGATCACGACCGAGATGCAGAGTGACTCTGC
                              tacttac  putative branch site (score: 1)
       ttatactat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agttggtcaccttttgctataaaactacttgttatactatcttcatgattttcttacttacggatgagagtgagtttcaGGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTATCCAAGGGCTTATAGAATTGATCACGACCGAGATGCAGAGTGACTCTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG