1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtaagtaccttgtcattgagattcaaactgctgttcaaaggttggcatgaagatacttaatgcttcagctttaatacagGATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGGCAAGTTCGAATTGAAGCAAGTAGAGCACTCCTTGATCTTGAATTCCACT
species | Glycine max |
transcript | GLYMA17G13080.2 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: TCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTT GATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGGEST: gi|5058335|gb|AI736811.1|AI736811
genomic: TCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTTgtaagtacct ... tttaatacagGATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGG
EST: TCCCGACATTGACCCAAATTGCATTAAAGCTTTCAGGGTTCATTCCTCTT GATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGGEST: gi|8283658|gb|BE021217.1|BE021217
genomic: TCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTTgtaagtacct ... tttaatacagGATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGG
EST: TCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTT GATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGGEST: gi|9565778|gb|BE475287.1|BE475287
genomic: TCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTTgtaagtacct ... tttaatacagGATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGG
EST: TTTCAGGGTTCATTCCTCTT GATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGGEST: gi|18041385|gb|BM309679.1|BM309679
genomic: TTTCAGGGTTCATTCCTCTTgtaagtacct ... tttaatacagGATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGG
EST: TCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTT GATCGAGTTTAT
genomic: TCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTTgtaagtacct ... tttaatacagGATCGAGTTTAT
aaactgctgttcaaaggttggcatgaagatacttaatgcttcagctttaatacagGATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGGCAAGTTCGAATTGAAGCAAGTAGAGCACTCCTTGATCTTGAATTCCACT
ctttaat putative branch site (score: 4)
atacttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaccttgtcattgagattcaaactgctgttcaaaggttggcatgaagatacttaatgcttcagctttaatacagGATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGGCAAGTTCGAATTGAAGCAAGTAGAGCACTCCTTGATCTTGAATTCCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA