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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccttatgaatgttttctttttaagtgaccaaaattgtgtccctttactctaaatttgggtgatgcctttatttggacattatcgtaaacatccttcttctttacagGTTTCAGAGGTGTACTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCTCTTCAAGGCCATCTATTAATAGCATCTGGTCCAAAAATTATTCTGC

Basic information

species Glycine max
transcript GLYMA16G32890.1
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32890.1 (Glycine max), 3'ss of exon 22
lower sequence: Vv16s0022g01860.t01 (Vitis vinifera), 3'ss of exon 22
-----------------------------------------------gtatccttatgaatgttttctttttaagt-gaccaaaattg---------tgtccctttactctaaatttgggtgatgcctttatttggacattatcgtaaacatccttcttctttacagGTTTCAGAGGTGTACTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCTCTTCAAGGCCATCTATTAATAGCATCTGGTCCAAAAATTATTCTGC
                                                |||  ||   | | |   |  |  || | | |||   |||         |||  |||| ||   | |     | |      | ||       | |  ||       || |||||| |||||||| ||| | |||||||||||  | |||||||| ||||||||| | ||||| |||||||| ||| | || ||||| ||||| || ||||||||  | |
gtatttagtatcatctggagcttgcttagtctagttctgttttgtttttatatttccaattttccacaataaaacttggccagttttggagcaagcatgtatcttttcttgtagtcctcttaaacttcctgttgatgttctgtaatatttgcttttattcttttcagGTTTCTGAGATCTACTCTAAGGAGCTGAAAGGTGCCATATCTGCCGTAGCCTCACTTCAAGGTCATTTGTTGATAGCTTCTGGACCTAAAATTATCTTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8827267|gb|BE210997.1|BE210997
EST:     GTATCCTATTGTTCTCTTTGGGGAAAAATACTGATAATCCACAAACTCTG                         GTTTCAGAGGTGTACTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCC
genomic: GTATCCTATTGTTCTCTTTGGGGAAAAATACTGATAATCCACAAACTCTGgtatccttat ... ttctttacagGTTTCAGAGGTGTACTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgggtgatgcctttatttggacattatcgtaaacatccttcttctttacagGTTTCAGAGGTGTACTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCTCTTCAAGGCCATCTATTAATAGCATCTGGTCCAAAAATTATTCTGC
 ctctaaa  putative branch site (score: 3)
                                     catccttcttctttac  putative PPT
               tttattt  TA-rich tract