1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...tctaagttttgtgtaacagtagcttccgtgattgctacaatgttttcgatcttcaacatctagtataactttgttgtgatttttctacttatcttaccagAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAAGAAGGCAAAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTT
species | Glycine max |
transcript | GLYMA15G04850.1 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATG AAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAAEST: gi|193639469|gb|FK585710.1|FK585710
genomic: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGgtaacatagt ... atcttaccagAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAA
EST: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATG AAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAAGAAAAEST: gi|193608231|gb|FK555212.1|FK555212
genomic: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGgtaacatagt ... atcttaccagAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAA-GAAAA
EST: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATG AAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAAEST: gi|208210781|gb|GE011786.1|GE011786
genomic: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGgtaacatagt ... atcttaccagAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAA
EST: GTCAATTGGGCACTTAGTTTCGTTTGCATG AAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAEST: gi|208218257|gb|GE019201.1|GE019201
genomic: GTCAATTGGGCAC-TAG-TTCG-TTGCATGgtaacatagt ... atcttaccagAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAA
EST: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATG AAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAAEST: gi|208184104|gb|GD981934.1|GD981934
genomic: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGgtaacatagt ... atcttaccagAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAA
EST: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATG AAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAAEST: gi|207758023|gb|GD727761.1|GD727761
genomic: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGgtaacatagt ... atcttaccagAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAA
EST: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTGGCATG AAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAAEST: gi|193513351|gb|FK471459.1|FK471459
genomic: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGgtaacatagt ... atcttaccagAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAA
EST: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATG AAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAAEST: gi|207792345|gb|GD764251.1|GD764251
genomic: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGgtaacatagt ... atcttaccagAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAA
EST: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATG AAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAAEST: gi|207778265|gb|GD748828.1|GD748828
genomic: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGgtaacatagt ... atcttaccagAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAA
EST: ACGTCATCCTTTCTTCCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATG AAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAAGAAAAEST: gi|208245985|gb|GE050695.1|GE050695
genomic: ACGTCATCCTTTCTTCC-GGGGTGTCAATTGGGCACTAGTTCGTTGCATGgtaacatagt ... atcttaccagAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAA-GAAAA
EST: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATG AAAACCTACCTGAGCTTGATGCTCCTCTCTTAC
genomic: AACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGgtaacatagt ... atcttaccagAAA-CCT-CCTGAGCTTGATGCTCCTCTCTTAC
tcgatcttcaacatctagtataactttgttgtgatttttctacttatcttaccagAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAAGAAGGCAAAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTT
gtataac putative branch site (score: 3)
tttttctacttatctt putative PPT
atttttctacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaagttttgtgtaacagtagcttccgtgattgctacaatgttttcgatcttcaacatctagtataactttgttgtgatttttctacttatcttaccagAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAAGAAGGCAAAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - ttttgtg
- - - - - - - - - - -gcttccg
- - - - - - - - - - - - - - - - tgctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -caacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg