Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggagggtcattcacttttgacattgtctttaactttaaaacaagttgttcttgattcatacaaccttttatttgcagTTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCATGCCATGGTGCTCGTCCTTCAGAGCGAG

Basic information

species Glycine max
transcript GLYMA14G11220.2
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G11220.2 (Glycine max), 3'ss of exon 22
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 22
---------------------------------------------------------------------------gtgagggagggtcattcacttttgacattgtctttaactttaaaacaagttgttcttgattcatacaaccttttatttgcagTTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCATGCCATGGTGCTCGTCCTTCAGAGCGAG
                                                                           || |        |      ||||||| |||| |||   |        |     | |  | | ||  ||||||||   ||||||||||||||||| ||||||||||||||| ||||||| | ||  ||||| |||   |||| |||  |||||||||
gttaaaagatttttgctgtatttttttaatccctttgttttactaggccagaaactcaaagttgtgctttgctgtgtcaatataaaactggttgttttgaccttgtttttttttcctttttcaa--actttcaactgatgtaacctttttcatgcagTTTCATTGGAAATCCTGGTCTTTGTGGTTATTGGCTTAGTTCTCCATGTCATCAGGCTCATCCAACAGAGCGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193422179|gb|FK387188.1|FK387188
EST:     TTTGGTGTTATCCCCACGAGTAACAACTTTACCAGGTTTCCCCCTGACAG                         TTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCATGCCA
genomic: TTTGGTGTTATCCCCACGAGTAACAACTTTACCAGGTTTCCCCCTGACAGgtgagggagg ... ttatttgcagTTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCATGCCA
EST: gi|27424345|gb|CA935865.1|CA935865
EST:     TTTGGTGTTATCCCCACGAGTAACAACTTTACCAGGTTTCCCCCTGACAG                         TTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCATGCCA
genomic: TTTGGTGTTATCCCCACGAGTAACAACTTTACCAGGTTTCCCCCTGACAGgtgagggagg ... ttatttgcagTTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCATGCCA
EST: gi|193435196|gb|FK399850.1|FK399850
EST:     TTGGTGTTATCCCCACGAGTAACAACTTTACCAGGTTTCCCCCTCGACAG                         TTTCATTGGAAACCCT
genomic: TTGGTGTTATCCCCACGAGTAACAACTTTACCAGGTTTCCCCCT-GACAGgtgagggagg ... ttatttgcagTTTCATTGGAAACCCT
EST: gi|193362840|gb|FK324432.1|FK324432
EST:     TTTGGTGTTATCCCCACGAGTAACAACTTTACCAGGTTT-CCCCTGACAG                         TTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCATGCCA
genomic: TTTGGTGTTATCCCCACGAGTAACAACTTTACCAGGTTTCCCCCTGACAGgtgagggagg ... ttatttgcagTTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCATGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtctttaactttaaaacaagttgttcttgattcatacaaccttttatttgcagTTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCATGCCATGGTGCTCGTCCTTCAGAGCGAG
                                         ccttttattt  CT-rich tract
     tttaactttaaaacaa  TA-rich tract