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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtggtgtatatttatatttttttttctctaaatgattatccttggattcaatgcttacatgctcatattgggattacagATATGTTGTTGAGAGGATGGATGGTGATCTTTGGGAGAAAGTTCTTAACCCTGATAATACCTACAGAAGGCAACTTATTGATCAGGTTGTATCTACAGCT

Basic information

species Glycine max
transcript GLYMA11G35460.1
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 22
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 21
----------------------gtttgtggtgtatatttatatttttttttctctaaatgattatccttggattcaatgcttacatgctcata---ttgggattacagATATGTTGTTGAGAGGATGGATGGTGATCTTTGGGAGAAAGTTCTTAACCCTGATAATACCTACAGAAGGCAACTTATTGATCAGGTTGTATCTACAGCT
                      |||  || ||  | ||  |  ||    | ||||| ||  | | |  ||| |    || | |  | | ||||   ||   ||| ||||||||| |||||||| |||||||||||||| ||||| ||||||||| | ||||| |||   || ||||||||||| ||||| || || || || || || 
gtatataattatttttgttcctgttactgatgccttttgtttgttccagtcctctatatattgagcaatggctcgcttggtcatgt-cacataaatttaaaatttcagATATGTGGTTGAGAGAATGGATGGTGATCTGTGGGATAAAGTTCTTCAGCCTGAGAATGAATATAGAAGGCAACTCATTGACCAAGTGGTTTCGACCGCA

upper sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 22
lower sequence: GRMZM2G111355_T01 (Zea mays), 3'ss of exon 3
---------------gtttgtggtgtatatttatatttttttt----tctctaaat-gattatccttggattca-atgcttacat-gctcatatt-gggattacagATATGTTGTTGAGAGGATGGATGGTGATCTTTGGGAGAAAGTTCTTAACCCTGATAATACCTACAGAAGGCAACTTATTGATCAGGTTGTATCTACAGCT
                 |||| |||  |  | | |  | |||     | || | ||  ||| ||    || | | ||| | | || ||   ||||    || |||| ||||| |||||||| |||||||||||||| ||||| ||||||||| | || || |||   || ||||||||||| ||||| || || || || || || 
gtatgtaataatttttattgttgtgacttgtgacacctgtttcaagatgtccacatcaattgtctgacgacttacatgttcatattgcatttatttaaaatgacagGTATGTGGTTGAGAGAATGGATGGTGATCTATGGGATAAAGTTCTTCAGCCCGAGAATGAATATAGAAGGCAACTCATTGACCAAGTGGTTTCGACTGCA

upper sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 22
lower sequence: GRMZM2G325285_T01 (Zea mays), 3'ss of exon 12
---------------gtttgtggtgtatatttatatttttttt----tctctaaat-gattatccttggattca-atgcttacat-gctcatatt-gggattacagATATGTTGTTGAGAGGATGGATGGTGATCTTTGGGAGAAAGTTCTTAACCCTGATAATACCTACAGAAGGCAACTTATTGATCAGGTTGTATCTACAGCT
                 |||| |||  |  | | |  | |||     | || | ||  ||| ||    || | | ||| | | || ||   ||||    || |||| ||||| |||||||| |||||||||||||| ||||| ||||||||| | || || |||   || ||||||||||| ||||| || || || || || || 
gtatgtaataatttttattgttgtgacttgtgacacctgtttcaagatgtccacatcaattgtctgacgacttacatgttcatattgcatttatttaaaatgacagGTATGTGGTTGAGAGAATGGATGGTGATCTGTGGGATAAAGTTCTTCAGCCCGAGAATGAATATAGAAGGCAACTCATTGACCAAGTGGTTTCGACTGCA

upper sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 22
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 23
--gtttg--tggtgtatatttatatttttttttct-ctaaatgattatccttggattcaatgcttacatgctcatattgggattacagATATGTTGTTGAGAGGATGGATGGTGATCTTTGGGAGAAAGTTCTTAACCCTGATAATACCTACAGAAGGCAACTTATTGATCAGGTTGTATCTACAGCT
   ||||  |  ||  || |    || ||  || |  |  |   |  |   |   |  | | ||||||  |  || ||   | | ||| || || || ||||||||||||||||| || |||||||| |||||||     || |||   || || ||||||||||| || || ||||| ||||| |||
gtatttgattattgcttactagacttcttacttatattccacactagttactttgtagactacttacacacg-attttccaactgcagGTACGTAGTGGAGAGGATGGATGGTGACCTCTGGGAGAAGGTTCTTACGGAAGAAAATGAATATAGGAGGCAACTTATAGACCAAGTTGTGTCTACTGCT

upper sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 22
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 23
gtttgtgg--tgtatatttat--atttttttttctctaaatgattatccttgg-attcaatgcttacatgctcatattgggattacagATATGTTGTTGAGAGGATGGATGGTGATCTTTGGGAGAAAGTTCTTAACCCTGATAATACCTACAGAAGGCAACTTATTGATCAGGTTGTATCTACAGCT
|||||||   ||| || ||    || | || |  | |  |||  |    |||| |         ||| | | |||| |   ||| ||||||||| ||||| |||||||||  |||||| ||||||||||||||| |||||||||||   || ||||| || || |||||||| || |||||||| |||
gtttgtgacttgtttacttcccgatatattatcatatgcatggattcatttggtacatggacgctacttacacatacttccatttcagATATGTAGTTGAAAGGATGGATTCTGATCTCTGGGAGAAAGTTCTTGACCCTGATAATGATTATAGAAGACAGCTCATTGATCAAGTAGTATCTACTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctaaatgattatccttggattcaatgcttacatgctcatattgggattacagATATGTTGTTGAGAGGATGGATGGTGATCTTTGGGAGAAAGTTCTTAACCCTGATAATACCTACAGAAGGCAACTTATTGATCAGGTTGTATCTACAGCT
                           tgcttac  putative branch site (score: 2)
     aaatgattat  TA-rich tract