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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtatgcaagtcattaagctacattcatgcttgtaaagactttatatggttgactgttctaatccgtgaggtttttccatacgtttcacattgcagGCAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGACCTTTGAACGAAATTCCGCATATAGCG

Basic information

species Glycine max
transcript GLYMA11G27870.1
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G27870.1 (Glycine max), 3'ss of exon 22
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 3'ss of exon 21
gttgtatgcaagtcattaagctacattcatgcttgtaaagactttatatggttgactgttctaatccgtgaggtttttccatacgtttcacattgcagGCAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGACCTTTGAACGAAATTCCGCATATAGCG
       |  |   ||| |  || | |  || |  |      ||    || |     |||  || || | |   | |  |||   |||    ||| |||| || ||||| ||  |||||||||| ||||||||||| |||||||| ||||| || || || | |
-------gttatatattgaattaaacttgtgttcttttcagtttctggtgtt--gtggttagaaaccttaaaagtgt--cattgcttt---gttgtagGCGGTATTGAGAGCGTTATATGCTTACTTTGCTGACAGGCCTTTGAAAGAAATCCCACACATTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336524|gb|CO980390.1|CO980390
EST:     TTATAGAGCTTGAGCGCCAACGAGCACCTGTTGTTGTGATATCTCACCAG                         GCAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGACCTTTGAACGAA
genomic: TTATAGAGCTTGAGCGCCAACGAGCACCTGTTGTTGTGATATCTCACCAGgttgtatgca ... cacattgcagGCAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGACCTTTGAACGAA
EST: gi|51336471|gb|CO980337.1|CO980337
EST:     TTATAGAGCTTGAGCGCCAACGAGCACCTGTTGTTGTGATATCTCACCAG                         GCAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGACCTTTGAACGAA
genomic: TTATAGAGCTTGAGCGCCAACGAGCACCTGTTGTTGTGATATCTCACCAGgttgtatgca ... cacattgcagGCAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGACCTTTGAACGAA
EST: gi|9564592|gb|BE474101.1|BE474101
EST:     TTATAGAGCTTGAGCGCCAACGAGCACCTGTTGTTGTGATATCTCACCAG                         GCAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGACCTTTGAACGAA
genomic: TTATAGAGCTTGAGCGCCAACGAGCACCTGTTGTTGTGATATCTCACCAGgttgtatgca ... cacattgcagGCAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGACCTTTGAACGAA
EST: gi|22930234|gb|BU547373.1|BU547373
EST:     TTATAGAGCTTGAGCGCCAACGAGCACCTGTTGTTGTGATATCTCACCAG                         GCAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGACCTTTGAACGAA
genomic: TTATAGAGCTTGAGCGCCAACGAGCACCTGTTGTTGTGATATCTCACCAGgttgtatgca ... cacattgcagGCAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGACCTTTGAACGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatggttgactgttctaatccgtgaggtttttccatacgtttcacattgcagGCAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGACCTTTGAACGAAATTCCGCATATAGCG
               ttctaat  putative branch site (score: 2)
               ttctaat  TA-rich tract