1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtattattgtacattacttgtattttacctttgaatatcagtatgaatgttagtataccatattcttcctttattatgtagcaattcgaaacataagtattgtatgacctcgaggcaatgtggattttaactttttatgttggatttgtcatttgtcatacagTTAAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTAAAAAAGTCTGGTTCTTCAGGTAGTCAACTTAAAGAAGCTCAAAGTATCAACAAATCATTATCAG
species | Glycine max |
transcript | GLYMA11G09480.1 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: AATCAACTGCAAGGGGAAAG TTAAGTTTTGTGGATCNNNNNNGCNCAGAAAGAGTAAAAAAGNNNGGTTCTEST: gi|58014931|gb|CX701673.1|CX701673
genomic: AATCAACTGCAAGGGGAAAGgtattattgt ... tgtcatacagTTAAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTAAAAAAGTCTGGTTCT
EST: TTGTCATTGAAAGTACCAACCTTCAAAGCCAATCAACTGCAAGGGGAAAG TTAAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTAAAAAAGTCTGGTTCTEST: gi|58022523|gb|CX709264.1|CX709264
genomic: TTGTCATTGAAAGTACCAACCTTCAAAGCCAATCAACTGCAAGGGGAAAGgtattattgt ... tgtcatacagTTAAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTAAAAAAGTCTGGTTCT
EST: TTGTCATTGAAAGTACCAACCTTCAAAGCCAATCAACTGCAAGGGGAAAG TTAAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTAAAAAAGTCTGGTTCT
genomic: TTGTCATTGAAAGTACCAACCTTCAAAGCCAATCAACTGCAAGGGGAAAGgtattattgt ... tgtcatacagTTAAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTAAAAAAGTCTGGTTCT
ctcgaggcaatgtggattttaactttttatgttggatttgtcatttgtcatacagTTAAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTAAAAAAGTCTGGTTCTTCAGGTAGTCAACTTAAAGAAGCTCAAAGTATCAACAAATCATTATCAG
ttttaac putative branch site (score: 2)
attttaactttttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattattgtacattacttgtattttacctttgaatatcagtatgaatgttagtataccatattcttcctttattatgtagcaattcgaaacataagtattgtatgacctcgaggcaatgtggattttaactttttatgttggatttgtcatttgtcatacagTTAAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTAAAAAAGTCTGGTTCTTCAGGTAGTCAACTTAAAGAAGCTCAAAGTATCAACAAATCATTATCAG
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