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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtcaactcaactaatggcttcctccatgttgtttgtaatttttgtcgtgtcatcttatctttgtattcctattcctgttgcagGCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA

Basic information

species Glycine max
transcript GLYMA10G35190.2
intron # 22
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204575|gb|BI427343.1|BI427343
EST:     GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAG                         GCTTTGGTTGCCTTCATTAC
genomic: GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAGgcaagtcaac ... cctgttgcagGCTTTGGTTGCCTTCATTAC
EST: gi|207782752|gb|GD751481.1|GD751481
EST:     GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAG                         GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
genomic: GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAGgcaagtcaac ... cctgttgcagGCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
EST: gi|26058666|gb|CA801580.1|CA801580
EST:     GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAG                         GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
genomic: GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAGgcaagtcaac ... cctgttgcagGCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
EST: gi|51342395|gb|CO983470.1|CO983470
EST:     GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAG                         GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
genomic: GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAGgcaagtcaac ... cctgttgcagGCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
EST: gi|15812288|gb|BI784563.1|BI784563
EST:     GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAG                         GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
genomic: GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAGgcaagtcaac ... cctgttgcagGCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
EST: gi|51337373|gb|CO981239.1|CO981239
EST:     GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAG                         GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
genomic: GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAGgcaagtcaac ... cctgttgcagGCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
EST: gi|254340255|gb|GR858380.1|GR858380
EST:     GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAG                         GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
genomic: GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAGgcaagtcaac ... cctgttgcagGCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
EST: gi|254341252|gb|GR854980.1|GR854980
EST:     GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAG                         GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
genomic: GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAGgcaagtcaac ... cctgttgcagGCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
EST: gi|13789586|gb|BG652177.1|BG652177
EST:     GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAG                         GCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
genomic: GATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAGgcaagtcaac ... cctgttgcagGCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttgtaatttttgtcgtgtcatcttatctttgtattcctattcctgttgcagGCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGA
                                     ttcctattcctgtt  CT-rich tract
     tgtaattttt  TA-rich tract