1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...cgtattggtcatcttttcaatttgagcgcgtacaatacattgaaaatcattttagttgcttattattttaccttattgtcattgcttttctctttcttagGCTTGGCAACTTCATGAAAAAAATTGCATAATTGATCTGGTGGATGATAGACTTTCAGAATTCAACGAGGAAGAAGTAAAACGTGTTGTAGGAATAGCAC
species | Glycine max |
transcript | GLYMA08G25600.1 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: CAAATTCTGATTCAAGTTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGG GCTTGGCAACTTCATGNNNNNNNTTGCATAATTGATCTGGTGGATGATAGAEST: gi|38192751|gb|CF921957.1|CF921957
genomic: CAAATTCTGATTCAAGTTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGGgtatgcatac ... tctttcttagGCTTGGCAACTTCATGAAAAAAATTGCATAATTGATCTGGTGGATGATAGA
EST: CAAATTCTGATTCAAGTTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGG GCTTGGCAACTTCATGNNNNNNNTTGCATAATTGATCTGGTGGATGATAGAEST: gi|254339252|gb|GR847969.1|GR847969
genomic: CAAATTCTGATTCAAGTTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGGgtatgcatac ... tctttcttagGCTTGGCAACTTCATGAAAAAAATTGCATAATTGATCTGGTGGATGATAGA
EST: CAAATTCTGATTCAAGTTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGG GCTTGGCAACTTCATGNNNNNNNTTGCATAATTGATCTGGTGGATGATAGAEST: gi|51343392|gb|CO984125.1|CO984125
genomic: CAAATTCTGATTCAAGTTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGGgtatgcatac ... tctttcttagGCTTGGCAACTTCATGAAAAAAATTGCATAATTGATCTGGTGGATGATAGA
EST: CAAATTCTGATTCAAGTTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGG GCTTGGCAACTTCATGNNNNNNNTTGCATAATTGATCTGGTGGATGATAGAEST: gi|151405104|gb|EV274918.1|EV274918
genomic: CAAATTCTGATTCAAGTTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGGgtatgcatac ... tctttcttagGCTTGGCAACTTCATGAAAAAAATTGCATAATTGATCTGGTGGATGATAGA
EST: CAAATTCTGATTCAAGTTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGG GCTTGGCAACTTCATGNNNNNNNTTGCATAATTGATCTGGTGGATGATAGAEST: gi|151405455|gb|EV275269.1|EV275269
genomic: CAAATTCTGATTCAAGTTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGGgtatgcatac ... tctttcttagGCTTGGCAACTTCATGAAAAAAATTGCATAATTGATCTGGTGGATGATAGA
EST: CAAATTCTGATTCAAGTTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGG GCTTGGCAACTTCATGNNNNNNNTTGCATAATTGATCTGGTGGATGATAGA
genomic: CAAATTCTGATTCAAGTTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGGgtatgcatac ... tctttcttagGCTTGGCAACTTCATGAAAAAAATTGCATAATTGATCTGGTGGATGATAGA
atcattttagttgcttattattttaccttattgtcattgcttttctctttcttagGCTTGGCAACTTCATGAAAAAAATTGCATAATTGATCTGGTGGATGATAGACTTTCAGAATTCAACGAGGAAGAAGTAAAACGTGTTGTAGGAATAGCAC
ccttattgtcattgct CT-rich tract
ttattattttacctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtattggtcatcttttcaatttgagcgcgtacaatacattgaaaatcattttagttgcttattattttaccttattgtcattgcttttctctttcttagGCTTGGCAACTTCATGAAAAAAATTGCATAATTGATCTGGTGGATGATAGACTTTCAGAATTCAACGAGGAAGAAGTAAAACGTGTTGTAGGAATAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - caataca
- - - - - - - - - - - - - - - - - - - - -gaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - gttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctttt