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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttaattcagctgtttttatttcttttttccccttttgttctcttggagactggtatctacaattcttttattcattttatgattatcattttattttaactttatctgttttttttttaatattttttgcagTCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCATTCCTTGAAAAACATAAAG

Basic information

species Glycine max
transcript GLYMA08G22180.1
intron # 22
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105033|gb|BI892773.1|BI892773
EST:     AGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGCCCAACTATTAG                         TCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCATTCCTTGAAAA
genomic: AGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGCCCAACTATTAGgttcttaatt ... ttttttgcagTCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCATTCCTTGAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgattatcattttattttaactttatctgttttttttttaatattttttgcagTCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCATTCCTTGAAAAACATAAAG
                                           tatttttt  CT-rich tract
          attttattttaacttt  TA-rich tract