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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttgttttttccccttttataattttgatttgatttttgaagataattttcaggggttgttcattttttaaaatgtttactgtcatttttttaattccctttttttcagAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTCGCTGTTTATTATAGATATCCAAATAGTCAGCGAGTTACATATGGGCAGTTCA

Basic information

species Glycine max
transcript GLYMA08G05320.1
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05320.1 (Glycine max), 3'ss of exon 22
lower sequence: AT1G24706.1 (Arabidopsis thaliana), 3'ss of exon 26
gtacttttgttttttccccttttataattttgatttgatttttgaagataattttcaggggttgttcattttttaaaatgtttactgtcatttttttaattccctttttttcagAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTCGCTGTTTATTATAGATATCCAAATAGTCAGCGAGTTACATATGGGCAGTTCA
           |          ||| ||| |  |||||   |  |||   |   || |||||| |   | |     | |   || ||   || || |   |    |||| ||||||| | |||||  | ||||||| |||||| ||||||||||| || || ||||||||||||||||| || || || ||||| || |||| ||| || ||  
----------gtaactattgaatattattattctttgacaatcaaagtatagaatc-ggggttttctttctaacctagttactaatgctgttgttgtttctaatcttttctcagAGTAAAGAATCAGTCTATGAACATGAGTGCGGAAACATGCCAGGGTTTGCTGTTTATTATAGATACCCGAACAGCCAGCGTGTCACATTTGGACAATTTG

upper sequence: GLYMA08G05320.1 (Glycine max), 3'ss of exon 22
lower sequence: Vv01s0011g06090.t01 (Vitis vinifera), 3'ss of exon 6
gtacttttgttttttccccttttataattttgatttgatttttgaagataattttcaggggttgttcattttttaaaat-gtttactgtcatttttttaattccctttttttcagAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTCGCTGTTTATTATAGATATCCAAATAGTCAGCGAGTTACATATGGGCAGTTCA
        || | |  |    |||     |||| | | |||||    ||  ||||  |||    | ||  |||||| || ||||  |||    |      |    ||||  ||||||||||||||| || |||||||| |||||||| |||||||| ||||| ||||| |||||||||||||| || |||||||| || |||||||| ||||| |
--------gtatctaacgaaattaatcacttgagtagcttttt---catttttttttggg----tgcagattttaagatagtttcatgttgactaacacttcattttttcatcagAGTGATGAATCAATATATGAACGGGAGTGTGGGAACATGCCAGGCTTTGCTGTCTATTATAGATATCCTAACAGTCAGCGTGTCACATATGGCCAGTTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttgttcattttttaaaatgtttactgtcatttttttaattccctttttttcagAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTCGCTGTTTATTATAGATATCCAAATAGTCAGCGAGTTACATATGGGCAGTTCA
                                  ttttaat  putative branch site (score: 3)
                         ctgtcatttttttaat  CT-rich tract
     ttcattttttaaaatg  TA-rich tract