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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacctctcaaataaaatgaaatatattgccacaataatagattgttccttgtcttctgtgtgtactgatcattgtgcattttcccttttaattttgaaagGCTAAGCAGCACCTTGCACTTTTATGTTTGGGGGAGATTGGTAGAAGGAAGGATCTAAGTACACATGCACACATAGAAAATATTGTTATTGAATCTTTCC

Basic information

species Glycine max
transcript GLYMA07G40230.1
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40230.2 (Glycine max), 3'ss of exon 22
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 3'ss of exon 22
cacctctcaaataaaatgaaatatattgccacaataatagattgttccttgtcttctgtgtgtactgatcattgtgcat-tttcccttttaattttgaaagGCTAAGCAGCACCTTGCACTTTTATGTTTGGGGGAGATTGGTAGAAGGAAGGATCTAAGTACACATGCACACATAGAAAATATTGTTATTGAATCTTTCC
    | |    |   |  |  | | |    |   |  |||  |     ||  |||||     || || |   | |   |  ||   |  | |||||   |||||||||| || |||||  |  | ||  |||| |||||||| || ||||| ||||||||| ||||||| || ||||| |||||||||||||| || ||||
ttgatttttgttgctactacttttgtcattatt-ttttaggctagatttttgcttctccaaatattgctttgtataactgcttttgtcattatttttttagGCTAAGCAACATCTTGCCTTGCTCTGCCTGGGAGAGATTGGCAGGAGGAAAGATCTAAGTTCACATGCTCATATAGAGAATATTGTTATTGAGTCCTTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9901515|gb|BE610483.1|BE610483
EST:     CAGTGAAAATGCTCACTGACATTCTCAAGGATGACAGCAGTTCTAACTCC                         GCTAAGCAGCACCTTGCACTTTTATGTTTGGGGGAGATTGGTAGAAGGAAG
genomic: CAGTGAAAATGCTCACTGACATTCTCAAGGATGACAGCAGTTCTAACTCCgtaagctttt ... attttgaaagGCTAAGCAGCACCTTGCACTTTTATGTTTGGGGGAGATTGGTAGAAGGAAG
EST: gi|208286193|gb|GE084235.1|GE084235
EST:     CAGTGAAAATGCTCACTGACATTCTCAAGGATGACAGCAGTTCTAACTCC                         GCTAAGCAGCACCTTGCACTTTTATGTTTGGGGGAGATTGGTAGAAGGAAG
genomic: CAGTGAAAATGCTCACTGACATTCTCAAGGATGACAGCAGTTCTAACTCCgtaagctttt ... attttgaaagGCTAAGCAGCACCTTGCACTTTTATGTTTGGGGGAGATTGGTAGAAGGAAG
EST: gi|10845351|gb|BF068498.1|BF068498
EST:     CAGTGAAAATGCTCACTGACATTCTCAAGGATGACAGCAGTTCTAACTCC                         GCTAAGCAGCACCTTGCACTTTTATGTTTGGGGGAGATTGGTAGAAGGAAG
genomic: CAGTGAAAATGCTCACTGACATTCTCAAGGATGACAGCAGTTCTAACTCCgtaagctttt ... attttgaaagGCTAAGCAGCACCTTGCACTTTTATGTTTGGGGGAGATTGGTAGAAGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttgtcttctgtgtgtactgatcattgtgcattttcccttttaattttgaaagGCTAAGCAGCACCTTGCACTTTTATGTTTGGGGGAGATTGGTAGAAGGAAGGATCTAAGTACACATGCACACATAGAAAATATTGTTATTGAATCTTTCC
                                 ttttcccttttaattt  CT-rich tract
                                        ttttaattttgaaa  TA-rich tract