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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttaattaagctgtttttacttctttttttcccttttgttctcttggagactggtatctacaattcttttattcattttatgattatcattttattttaactttatctgcttatttcttttttgcagTCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTTTCCTTGAAAAACATAAAG

Basic information

species Glycine max
transcript GLYMA07G03850.1
intron # 22
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193478942|gb|FK448011.1|FK448011
EST:     AGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGCCCTACTATTAG                         TCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTTTCCTTAGAAA
genomic: AGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGCCCTACTATTAGgttcttaatt ... ttttttgcagTCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTTTCCTT-GAAA
EST: gi|7692572|gb|AW760675.1|AW760675
EST:     AGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGCCCTACTATTAG                         TCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTTTCCTTGAAAA
genomic: AGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGCCCTACTATTAGgttcttaatt ... ttttttgcagTCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTTTCCTTGAAAA
EST: gi|14205586|gb|BG839264.1|BG839264
EST:     AGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGCCCTACTATTAG                         TCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTTTCCTTGAAAA
genomic: AGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGCCCTACTATTAGgttcttaatt ... ttttttgcagTCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTTTCCTTGAAAA
EST: gi|7685662|gb|AW756310.1|AW756310
EST:     AGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGCCCTACTATTAG                         TCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTTTCCTTGAAAA
genomic: AGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGCCCTACTATTAGgttcttaatt ... ttttttgcagTCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTTTCCTTGAAAA
EST: gi|14008965|gb|BG725569.1|BG725569
EST:     AGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGCCCTACTATTAG                         TCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTTTCCTTGAAAA
genomic: AGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGCCCTACTATTAGgttcttaatt ... ttttttgcagTCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTTTCCTTGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattttatgattatcattttattttaactttatctgcttatttcttttttgcagTCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTTTCCTTGAAAAACATAAAG
                      ttttaac  putative branch site (score: 2)
                            ctttatctgcttattt  CT-rich tract
                attttattttaacttt  TA-rich tract