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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacattactctttaccttcttgttgctttgttgaagtgcctcttaaactaaatatgcattgagcagGTATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTCAAAAACCTGGTGAACGATTGCCTTCACAAAATATTGATTGACAGGGACATTCCTGGGGCAGT

Basic information

species Glycine max
transcript GLYMA06G16110.2
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16110.1 (Glycine max), 3'ss of exon 22
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 3'ss of exon 22
gtaaacattactctttacctt---cttgttgctttgttgaagtgcctcttaaactaaatatgcattgagc----agGTATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTCAAAAACCTGGTGAACGATTGCCTTCACAAAATATTGATTGACAGGGACATTCCTGGGGCAGT
      |||    |||  |||    | | |    | ||    |    ||| |||   ||    | |  ||    |||||||||||||||  |||| ||||| |||||||| || || |||||||| |  || |||||||| |||||| |  | ||||| ||  ||||||| |||||
----gtattttcttttgtcttgtcttagatatcatcttaccttcttgctttaacatgattctaactttgcttatagGTATTGAAACAGTGAGAAGGGACAACTGTTTATTAGTAAAGAACCTGGTTACTGAGTGCCTTCATAAAATACTAGTGGACAGAGATGTTCCTGGTGCAGT

upper sequence: GLYMA06G16110.1 (Glycine max), 3'ss of exon 22
lower sequence: GRMZM2G115245_T01 (Zea mays), 3'ss of exon 6
------------------------------gtaaacattactctttacctt----cttgttgctttgttgaagtgcctcttaaactaaatatgcattgag--cagGTATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTCAAAAACCTGGTGAACGATTGCCTTCACAAAATATTGATTGACAGGGACATTCCTGGGGCAGT
                               |||||  |  || ||   |     |       || |||    | ||| | |||     | |   ||| |  ||||||||||||| ||  |||| ||||| |||||| |||| || |||||||| | ||| |||||||| |||||| || | ||| | ||  ||||||| |||||
gtattccttttttgtttagctgtgtaaagcataaactattttcattggatgtggacacagatgttagttatccttcctttcaaatgtcttctatcttgcgtgcagGTATTGAAACTGTAAGAAGGGACAACTGTTTACTGGTAAAGAACCTGGTAACCGAGTGCCTTCATAAAATACTGGTAGACCGTGATGTTCCTGGTGCAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaccttcttgttgctttgttgaagtgcctcttaaactaaatatgcattgagcagGTATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTCAAAAACCTGGTGAACGATTGCCTTCACAAAATATTGATTGACAGGGACATTCCTGGGGCAGT
                                  aactaaa  putative branch site (score: 2)
                             tcttaaactaaatat  TA-rich tract