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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaaatatattctcttgaaattttagacatttttttttaaatttcttaaatatttttgtttcatacagcatgccccttagaaagtctttaattccttaaaggaagacatttattataatttaaagtactctctttcatggtttttaacgttgctcactctgttctgtaagGCACGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACCAA

Basic information

species Glycine max
transcript GLYMA05G31270.1
intron # 22
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053550|gb|BM732217.1|BM732217
EST:     TAAAATGGGAAGACATTCTTTCTCTTGGAGAACAGCAAAGATTGGGGATG                         GCACGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACC
genomic: TAAAATGGGAAGACATTCTTTCTCTTGGAGAACAGCAAAGATTGGGGATGgtatgtaaat ... gttctgtaagGCACGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACC
EST: gi|10709930|gb|BF009654.1|BF009654
EST:     AGCAAAGATTGGGGATG                         GCACGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACC
genomic: AGCAAAGATTGGGGATGgtatgtaaat ... gttctgtaagGCACGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACC
EST: gi|9565283|gb|BE474792.1|BE474792
EST:     TAAAATGGGAAGACATTCTTTCTCTTGGAGAACAGCAAAGATTGGGGATG                         GCACGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACC
genomic: TAAAATGGGAAGACATTCTTTCTCTTGGAGAACAGCAAAGATTGGGGATGgtatgtaaat ... gttctgtaagGCACGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatttaaagtactctctttcatggtttttaacgttgctcactctgttctgtaagGCACGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACCAA
                                   tgctcac  putative branch site (score: 2)
                                         ctctgttct  CT-rich tract
                         tttttaa  TA-rich tract