Sequence
atgc intronic sequence ATGC exonic sequencegttctgatgtcaataaaacagttgttggcttttatttatgtactaaaattgtgcatattttcttctaacagctttgtatttatttgacttaattgttccactgatattttaattgcagAAAAATTACATTAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCT
Basic information
species | Glycine max |
transcript | GLYMA03G03120.2 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G03120.2 (Glycine max), 3'ss of exon 22
lower sequence: AT1G71820.1 (Arabidopsis thaliana), 3'ss of exon 22
gttctgatgtcaataaaacagttgttggcttttatttatgtactaaaattgt-gcatattttcttctaacagctt-tgtatttatttgacttaattgttccactgatattttaattgcagAAAAATTACATTAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCT
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-----------------------gtt--cccccatttattctcaagcatttttaccttttatatttcatcagcatacacaaacactgaacctttggggttgacgtgtgt---aattccagAAAAACTACATCAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAAGAGGTTCTCATGGATTTCTTTAGGGAGTATATAAGTGCATCT
upper sequence: GLYMA03G03120.2 (Glycine max), 3'ss of exon 22
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 3'ss of exon 21
gttctgatgtcaataaaacagttgttggcttttatttatgtactaaaattgtgcatattttcttctaacagctttgtatttatttgacttaattgttccactgatattt-taattgcagAAAAATTACATTAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCT
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gtttt--tgttga-aaagaatttatagtttcccatttgttggatatatttttgtatgtatcctcctgtaatatcttttgtttccttgcatgaatggcttaatgatgcttgtgattgcagAGAAACTATATAAAGGAAGAAACCATTGAACGGATGAGGCTAGATGAAGAGGTTATCTTGGATTTCTTTAGGGAGTACATAAGTGTCTCC
upper sequence: GLYMA03G03120.2 (Glycine max), 3'ss of exon 22
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 21
gttctgatgtcaataaaacagttgttggcttttatttatgtactaaaatt--gtgcatattttcttctaacagctttgtatttatttgacttaattgttccactgatattt-taattgcagAAAAATTACATTAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCT
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gtttt--tgttga-aaagaatttatagtttcccatttgttggatatattttgatatgtattctcctgtaatatattt-tgtttccttg-cgtgaatggtttaatgatgcttgtgattgtagAGAAACTATATAAAGGAAGAAACCATTGAACGGATGAGGTTAGACGAAGAGGTTATCTTGGATTTCTTTAGGGAGTACATAAGTGTCTCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctaacagctttgtatttatttgacttaattgttccactgatattttaattgcagAAAAATTACATTAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCT
tttgtatttatttgac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttctgatgtcaataaaacagttgttggcttttatttatgtactaaaattgtgcatattttcttctaacagctttgtatttatttgacttaattgttccactgatattttaattgcagAAAAATTACATTAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA