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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagatccaattgcaatatagaatatatgacaattactgatacatgcagccatgttaaacctatccctttgagtatagcttatcacagtaaaatcttttggattctgaatatttttttatcttctatgtagGTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTTTCTAACCAGAATTTACCGTGACTCTTCAAAAATATTCCATCTAGGGCAT

Basic information

species Glycine max
transcript GLYMA01G01230.1
intron # 22
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58025193|gb|CX711934.1|CX711934
EST:     GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatcc ... ttctatgtagGTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
EST: gi|9902990|gb|BE611958.1|BE611958
EST:     GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatcc ... ttctatgtagGTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
EST: gi|58024062|gb|CX710803.1|CX710803
EST:     GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatcc ... ttctatgtagGTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
EST: gi|254321698|gb|GR825015.1|GR825015
EST:     GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatcc ... ttctatgtagGTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
EST: gi|6567219|gb|AW234830.1|AW234830
EST:     GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatcc ... ttctatgtagGTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
EST: gi|193674227|gb|FK619433.1|FK619433
EST:     GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatcc ... ttctatgtagGTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttatcacagtaaaatcttttggattctgaatatttttttatcttctatgtagGTACAAGCTGACACATTGGCCGCTAGAGAAGTTGCAGAATCTATGGGACTTTCTAACCAGAATTTACCGTGACTCTTCAAAAATATTCCATCTAGGGCAT
                                 tatttttttatcttct  CT-rich tract
                               aatatttttttatctt  TA-rich tract