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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggctattcttcatgtccggctggtctttttacatgtatattcttgtttgctaataatatttccctgttatggttaaatcactgcaatagAATCCCGCTGAACTTGACAACTGGCTTGGCGATTTGAACCCAAATTCCAAAGTGATAATTCCCGATGCATATGGTGTGTCTTCCATACAGAATGCAAAAG

Basic information

species Glycine max
transcript GLYMA20G25120.2
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14999379|gb|BI320344.1|BI320344
EST:     ATCCATTGAAGGTGGAAGTCAGATTGTTTGAGAGGCTATTCCTATCAGAG                         AATCCCGCTGAACTTGACAACTGGCTTGGCGATTTGAACCCAAATTCCAAA
genomic: ATCCATTGAAGGTGGAAGTCAGATTGTTTGAGAGGCTATTCCTATCAGAGgttggctatt ... actgcaatagAATCCCGCTGAACTTGACAACTGGCTTGGCGATTTGAACCCAAATTCCAAA
EST: gi|7685172|gb|AW755820.1|AW755820
EST:     ATCCATTGAAGGTGGAAGTCAGATTGTTTGAGAGGCTATTCCTATCAGAG                         AATCCCGCTGAACTTGACAACTGGCTTGGCGATTGGAACCCAAATTCCAAA
genomic: ATCCATTGAAGGTGGAAGTCAGATTGTTTGAGAGGCTATTCCTATCAGAGgttggctatt ... actgcaatagAATCCCGCTGAACTTGACAACTGGCTTGGCGATTTGAACCCAAATTCCAAA
EST: gi|193656731|gb|FK603763.1|FK603763
EST:     ATCCATTGAAGGTGGAAGTCAGATTGTTTGAGAGGCTATTCCTATCAGAG                         AATCCCGCTGAACTTGACAACTGGCTTGGCGATTTGAACCCAAATTCCAAA
genomic: ATCCATTGAAGGTGGAAGTCAGATTGTTTGAGAGGCTATTCCTATCAGAGgttggctatt ... actgcaatagAATCCCGCTGAACTTGACAACTGGCTTGGCGATTTGAACCCAAATTCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatattcttgtttgctaataatatttccctgttatggttaaatcactgcaatagAATCCCGCTGAACTTGACAACTGGCTTGGCGATTTGAACCCAAATTCCAAAGTGATAATTCCCGATGCATATGGTGTGTCTTCCATACAGAATGCAAAAG
             tgctaat  putative branch site (score: 2)
           tttgctaataatattt  TA-rich tract