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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtaattagttatttagagacttgacttcttaacttcctcacatatataaataatttctttcagtgtctaacttttctgatcttcacattttcttgcagGTTGTAGTCGAACTACCTCATGTTCTTCTACAAACTGTGGTCTATAGTGCTATAGTGTACGCAATGATTGGTTTTGAGTGGTCTGTCACTAAATTTTTCT

Basic information

species Glycine max
transcript GLYMA19G35270.1
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286557|gb|BI470448.1|BI470448
EST:     GGGAAAAAGCTGCTGGAATGTATTCAGCTTTGGCATATGCTTTTGCTCAG                         GTTGTAGTCGAACTACCTCATGTTCTTCTACAAACTGTGGTCTATAGTGCT
genomic: GGGAAAAAGCTGCTGGAATGTATTCAGCTTTGGCATATGCTTTTGCTCAGgcaagtaatt ... tttcttgcagGTTGTAGTCGAACTACCTCATGTTCTTCTACAAACTGTGGTCTATAGTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atataaataatttctttcagtgtctaacttttctgatcttcacattttcttgcagGTTGTAGTCGAACTACCTCATGTTCTTCTACAAACTGTGGTCTATAGTGCTATAGTGTACGCAATGATTGGTTTTGAGTGGTCTGTCACTAAATTTTTCT
                                    tcttcacattttctt  CT-rich tract
     aataatttctttca  TA-rich tract