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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttataaattttattgtgtcatttgtctttcgataatttggatggccttttctcagtattctgattttgcagCTACAAGATCAAATTGGAAGATGGAGCTCAAATAAAACCTCACATACCTTTGCTAAATGACCGGATATATGACACTAAATTTGAGTCTCAATTTTATATG

Basic information

species Glycine max
transcript GLYMA16G30190.2
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G30190.2 (Glycine max), 3'ss of exon 21
lower sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 21
------gtgagttataaattttatt--gtgtcatttgtc---tttcgataatttggatggccttttctcag----------tattctgattttgcagCTACAAGATCAAATTGGAAGATGGAGCTCAAATAAAACCTCACATACCTTTGCTAAATGACCGGATATATGACACTAAATTTGAGTCTCAATTTTATATG
         | |  ||| |||| ||  || |   | |||   |||   | |  || |  |  || ||| ||          | | ||| || ||||| |||||| |||||||||||||||||||| ||||||||||||| || || || || ||  | || ||||| || |||||||||||||||||||||||||||
gtccgttccaatgttaacttttgtttggttttcctggtccatttttactgaactgcaaagtattatcttagccattcttgctctgctggttctgcagTTACAAGTTCAAATTGGAAGATGGAGCTGAAATAAAACCTCAAATTCCATTACTTAACAATCGCATATACGATACTAAATTTGAGTCTCAATTTTATATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6666526|gb|AW277920.1|AW277920
EST:     GATCGTGACAAACTTCCTTCTGGAAAACAGATTCTGGCACTGACTCTGAC                         CTACAAGATCAAATTGGAAGATGGAGCTCAAATAAAACCTCACATACCTTT
genomic: GATCGTGACAAACTTCCTTCTGGAAAACAGATTCTGGCACTGACTCTGACgtgagttata ... gattttgcagCTACAAGATCAAATTGGAAGATGGAGCTCAAATAAAACCTCACATACCTTT
EST: gi|19453651|gb|BM955061.1|BM955061
EST:     AAACTTCCTTCTGGAAAACAGATTCTGGCACTGACTCTGAC                         CTACAAGATCAAATTGGAAGATGGAGCTCAAATAAAACCTCACATACCTTT
genomic: AAACTTCCTTCTGGAAAACAGATTCTGGCACTGACTCTGACgtgagttata ... gattttgcagCTACAAGATCAAATTGGAAGATGGAGCTCAAATAAAACCTCACATACCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcatttgtctttcgataatttggatggccttttctcagtattctgattttgcagCTACAAGATCAAATTGGAAGATGGAGCTCAAATAAAACCTCACATACCTTTGCTAAATGACCGGATATATGACACTAAATTTGAGTCTCAATTTTATATG
                                         ttctgat  putative branch site (score: 3)
               ataattt  TA-rich tract