1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...aaaagaagcaatgataaataaaagggatgattgaatatcagctacaaaagtgactagccttgtctgatttttgttaacgttatggatatactatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACCTTATTAAACGTCTTGCTGAAGAAGCTCAGGGGAATCAAACCCCTCAAG
species | Glycine max |
transcript | GLYMA15G13380.2 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACEST: gi|19271184|gb|BM887440.1|BM887440
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACEST: gi|254324398|gb|GR833823.1|GR833823
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACEST: gi|21889070|gb|BQ742283.1|BQ742283
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACEST: gi|57575891|gb|CX548862.1|CX548862
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACEST: gi|22929445|gb|BU546584.1|BU546584
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACEST: gi|58021487|gb|CX708228.1|CX708228
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACEST: gi|8401463|gb|BE057159.1|BE057159
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACEST: gi|12689756|gb|BG156092.1|BG156092
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACEST: gi|31456933|gb|CD398961.1|CD398961
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACEST: gi|17153054|gb|BM142987.1|BM142987
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: CTGGGTACAAATGGACATAGCTGGAGAGTATCGACATGGCACT CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACEST: gi|58025332|gb|CX712073.1|CX712073
genomic: CTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
EST: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT CTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
genomic: AGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTgtgagtatga ... ctatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAAC
aaaagtgactagccttgtctgatttttgttaacgttatggatatactatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACCTTATTAAACGTCTTGCTGAAGAAGCTCAGGGGAATCAAACCCCTCAAG
tgttaac putative branch site (score: 2)
atttttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagaagcaatgataaataaaagggatgattgaatatcagctacaaaagtgactagccttgtctgatttttgttaacgttatggatatactatttgcagCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACCTTATTAAACGTCTTGCTGAAGAAGCTCAGGGGAATCAAACCCCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
aaaagaa
- - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - -agctaca
- - - - - - - - - - - - - - - - - - - - - - - - -gtgacta