1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...agtgggataaggctttgttattaactttttttggaaattactttctgtttagaatgtcaaggttctgcctaatttgtgcattttgaatcattgtctgcagATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGAAAGAAGTTGGACCGCTACAA
species | Glycine max |
transcript | GLYMA15G10370.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: AGTTGAAAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATG ATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCEST: gi|58023312|gb|CX710053.1|CX710053
genomic: AGTTGAAAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATGgtatgttaca ... ttgtctgcagATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTC
EST: AGTTGAAAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATG ATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCEST: gi|10238767|gb|BE807655.1|BE807655
genomic: AGTTGAAAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATGgtatgttaca ... ttgtctgcagATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTC
EST: GAAAGATACAAGGAATTAAATG ATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCEST: gi|193422520|gb|FK387599.1|FK387599
genomic: GAAAGATACAAGGAATTAAATGgtatgttaca ... ttgtctgcagATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTC
EST: TGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATG ATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCEST: gi|57575241|gb|CX548216.1|CX548216
genomic: TGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATGgtatgttaca ... ttgtctgcagATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTC
EST: AGTTGAAAGATATGCAAAGGTC-TTAAAGAAAGATACAAGGAATTAAATG ATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCEST: gi|192313279|gb|FK005051.1|FK005051
genomic: AGTTGAAAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATGgtatgttaca ... ttgtctgcagATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTC
EST: AGTTGAAAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATG ATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCEST: gi|5666886|gb|AI930922.1|AI930922
genomic: AGTTGAAAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATGgtatgttaca ... ttgtctgcagATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTC
EST: AGTTGAAAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAACTAAATG ATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATCTCTCEST: gi|193703234|gb|FK637006.1|FK637006
genomic: AGTTGAAAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATGgtatgttaca ... ttgtctgcagATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTC
EST: AGTTGAAAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATG ATTATGACAGAATTATTAAAAACATTGGAAAGGGGGGAGGCAAGAATTTCTEST: gi|7796461|gb|AW781858.1|AW781858
genomic: AGTTGAAAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATGgtatgttaca ... ttgtctgcagATTATGACAGAATTATTAAAAACATTG-AAAGGGGGGAGGCAAGAATTTCT
EST: AAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATG ATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTC
genomic: AAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATGgtatgttaca ... ttgtctgcagATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTC
tgtttagaatgtcaaggttctgcctaatttgtgcattttgaatcattgtctgcagATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGAAAGAAGTTGGACCGCTACAA
gcctaat putative branch site (score: 3)
attttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgggataaggctttgttattaactttttttggaaattactttctgtttagaatgtcaaggttctgcctaatttgtgcattttgaatcattgtctgcagATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGAAAGAAGTTGGACCGCTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - ggctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattt