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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtgtactgtccttcattaaggtgtcattgtatttcataatgttagtttgggacactcatgttatttcttgatgtttgtatcagATATGTCGTGGAGCGTATGGATGCTGACCTCTGGGAGAAAGTTCTTAATCCTGAGAATGAGTTCAGAAGGCAGTTGATTGATCAAGTGGTGTCCACTGCT

Basic information

species Glycine max
transcript GLYMA14G37510.1
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 21
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 21
-------------------------gtgtgtgtactgtccttcattaaggtgtcattgtatttcataatg-ttagtttgggacactcatgttatttcttgatgtttgtatcagATATGTCGTGGAGCGTATGGATGCTGACCTCTGGGAGAAAGTTCTTAATCCTGAGAATGAGTTCAGAAGGCAGTTGATTGATCAAGTGGTGTCCACTGCT
                              ||   | |  ||  |  ||   ||  | ||||    ||||  | | ||||     |||  | | ||  | |  |||    ||||||||| || ||| | ||||||| ||| || ||||| ||||||||| | ||||||||||| |  ||||||||  | ||||| |||||||| || || || 
gtatataattatttttgttcctgttactgatgccttttgtttgttccagtcctctatatattgagcaatggctcgcttggtcatgtcacataaatt--taaaattt----cagATATGTGGTTGAGAGAATGGATGGTGATCTGTGGGATAAAGTTCTTCAGCCTGAGAATGAATATAGAAGGCAACTCATTGACCAAGTGGTTTCGACCGCA

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 21
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 23
gtgtgtgtactgtcct--tcattaaggtgtcattgtatttcataatgttag--------tttgggacactcatgttatttcttgatgtttgtatcagATATGTCGTGGAGCGTATGGATGCTGACCTCTGGGAGAAAGTTCTTAATCCTGAGAATGAGTTCAGAAGGCAGTTGATTGATCAAGTGGTGTCCACTGCT
|| ||| ||   | ||  |  |||||  ||| |||  |  ||||| |   |        | | |  |  | || || |  |||  | ||  ||| |||||||| |||||  | ||||||||||||||||||||||||||||||| ||| || || ||||  ||||||||  | ||||||||||| || || ||||||
gtttgtttatcatgctgatggttaagaggtctttgcttcacataaagcctgcagatttttattgacctattattttttcccttttttttgttattagATATGTGGTGGAAAGGATGGATGCTGACCTCTGGGAGAAAGTTCTTAGTCCCGATAACGAGTATAGAAGGCAACTAATTGATCAAGTTGTATCTACTGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatttcataatgttagtttgggacactcatgttatttcttgatgtttgtatcagATATGTCGTGGAGCGTATGGATGCTGACCTCTGGGAGAAAGTTCTTAATCCTGAGAATGAGTTCAGAAGGCAGTTGATTGATCAAGTGGTGTCCACTGCT
                                     tcttgat  putative branch site (score: 4)
       ataatgtta  TA-rich tract