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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggcggtgacatgaatcctatttatgcctattgatttagttcaatttctttgagacagaacgaaattgtactgagaaatatatcttttcatgaagGGATCTTCCTGTACCTGGTCGGGAGCTGTCAGGAGTTCATTTTGCCATGGAGTTTCTCCATGCAAACACTAAAAGCTTGCTTGATAGCAATCTCCAGGAT

Basic information

species Glycine max
transcript GLYMA14G32500.1
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G32500.1 (Glycine max), 3'ss of exon 21
lower sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 20
gtgaggcggtgacatgaatcctatttatgcc----tattgatttagttcaatttctttgagacagaacgaaattgtactgagaaatatatcttttcatgaagGGATCTTCCTGTACCTGGTCGGGAGCTGTCAGGAGTTCATTTTGCCATGGAGTTTCTCCATGCAAACACTAAAAGCTTGCTTGATAGCAATCTCCAGGAT
|| |     ||| | |       | || |||    || || || | |  | || |    |   ||   |   ||| ||| |  ||  | |  |||     ||||| |||||||| || || |||||| | |||||| | |||||||| ||| | ||||| ||||||||||| |||||||||||||| ||||| ||  |||||
gtaaaaaactgaaaggggaaagctataggccatgatagtgtttaaatctatttgccactaagtagcttgtg-ttggactcatgaac-tgtgatttgtatcagGGACCTTCCTGTTCCGGGGCGGGAGTTATCAGGAATCCATTTTGCTATGAAATTTCTACATGCAAACACGAAAAGCTTGCTTGACAGCAACCTTGAGGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatttctttgagacagaacgaaattgtactgagaaatatatcttttcatgaagGGATCTTCCTGTACCTGGTCGGGAGCTGTCAGGAGTTCATTTTGCCATGGAGTTTCTCCATGCAAACACTAAAAGCTTGCTTGATAGCAATCTCCAGGAT
                                        tatcttttc  CT-rich tract
                                   aaatatatcttttcat  TA-rich tract