1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' |
...tgcacatatctgtacgtgtgtaaccaatataccatgcaagctttgttgtgttaccgtatgatatctgctaattctttaatgtctaatttatgtattttagGTTGTTCACTTTCGATCTCTAGAAAAACCCAAGGAAGATGACTTCTGCCTGGAGAT
species | Glycine max |
transcript | GLYMA14G04890.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TCCGCTATCCAGATGTGCCTTCATACCTAGAATATGTGCACAATCGCCAG GTTGTTCACTTTCGATCTCTAGAAAAACCCAAGGAAGATGACTCCTGCCTGEST: gi|208222827|gb|GE021244.1|GE021244
genomic: TCCGCTATCCAGATGTGCCTTCATACCTAGAATATGTGCACAATCGCCAGgtatttttct ... tgtattttagGTTGTTCACTTTCGATCTCTAGAAAAACCCAAGGAAGATGACTTCTGCCTG
EST: TCCGCTATCCAGATGTGCCTTCATACCTAGAATATGTGCACAATCGCCAG GTTGTTCACTTTEST: gi|208068892|gb|GD862822.1|GD862822
genomic: TCCGCTATCCAGATGTGCCTTCATACCTAGAATATGTGCACAATCGCCAGgtatttttct ... tgtattttagGTTGTTCACTTT
EST: TCCGCTATCCAGATGTGCCTTCATACCTAGAATATGTGCACAATCGCCAG GTTGTTCACTTTCGATCTCTAGAAAAACCCAAGGAAGATGACTCCTGCCTG
genomic: TCCGCTATCCAGATGTGCCTTCATACCTAGAATATGTGCACAATCGCCAGgtatttttct ... tgtattttagGTTGTTCACTTTCGATCTCTAGAAAAACCCAAGGAAGATGACTTCTGCCTG
ttgtgttaccgtatgatatctgctaattctttaatgtctaatttatgtattttagGTTGTTCACTTTCGATCTCTAGAAAAACCCAAGGAAGATGACTTCTGCCTGGAGAT
taattctttaatgtct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcacatatctgtacgtgtgtaaccaatataccatgcaagctttgttgtgttaccgtatgatatctgctaattctttaatgtctaatttatgtattttagGTTGTTCACTTTCGATCTCTAGAAAAACCCAAGGAAGATGACTTCTGCCTGGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
tgcacat
- - - - - - -acgtgtg
- - - - - - - - - - - - - - - -ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - tgttacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgcta