Sequence
atgc intronic sequence ATGC exonic sequencegtcattatagatttttcttctgtatgttgtatacttgtttggagttattctaataaaggcatatctatctttatagagatgagtgatatgaacttaggatttgtcaaatttttaagtgttatgtatttttcttatcagGTTTTTATGGAAATTAGATGTCCTGATGGTGGGGATGGTGGAAGAAAAAGTTCATTTCCTGCAACTCACGAAGAAATTCATCCAACAGTAATGCTTAGTG
Basic information
species | Glycine max |
transcript | GLYMA13G26190.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G26190.1 (Glycine max), 3'ss of exon 21
lower sequence: LOC_Os10g35290.1 (Oryza sativa), 3'ss of exon 16
gtcattatagatttttcttctgtatgttgtatacttgtttggagttattctaataaaggcatatctatctttatagagatgagtgatatgaacttaggat-ttgtcaaatttttaagtgttatgtatttttcttatcagGTTTTTATGGAAATTAGATGTCCTGATGGTGGGGATGGTGGAAGAAAAAGTTCATTTCCTGCAACTCACGAAGAAATTCATCCAACAGTAATGCTTAGTG
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--------------------------------------------------------------gttcccttttatccacttcaatggtcctatattagtttattattacaagatgactaatttttcattctac--attagGCATTCATGGAAATACGATGCCCTGATGGTGGGGATGGTGGAAGAAACAAATTATTTCCTGCAACTCATGAAGAAATCCACCCTACAGCCATTCTTAGTG
upper sequence: GLYMA13G26190.1 (Glycine max), 3'ss of exon 21
lower sequence: GRMZM2G388892_T02 (Zea mays), 3'ss of exon 17
gtcattatagatttttcttctgtatgttgtatacttgtttggagtta-ttctaataaaggcatatctatctttatagagatgagtgatatgaacttaggatttgtcaaatttttaagtgttatgtatttttcttatcagGTTTTTATGGAAATTAGATGTCCTGATGGTGGGGATGGTGGAAGAAAAAGTTCATTTCCTGCAACTCACGAAGAAATTCATCCAACAGTAATGCTTAGTG
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-------------------------------------------gttgcttttgatcaa--ctccttattctttata-atcttcttaccgatagctcagtaattt----attttgaaatctaat------------ttagGCATTTATGGAGATACGGTGTCCTGATGGTGGGGATGGTGGGAGACAAGAACCATTTCCTGCAACTCATGAAGAGATCCACCCTACAGCTATTCTCAGTG
upper sequence: GLYMA13G26190.1 (Glycine max), 3'ss of exon 21
lower sequence: AT1G29940.1 (Arabidopsis thaliana), 3'ss of exon 18
gtcattatagatttttcttctgtatgttgtatacttgtttggagttattctaataaaggcatatctatctttatagagatgagtgatatgaacttaggatttgtcaaatttttaagtgttatgtatttttcttatcagGTTTTTATGGAAATTAGATGTCCTGATGGTGGGGATGGTGGAAGAAAAAGTTCATTTCCTGCAACTCACGAAGAAATTCATCCAACAGTAATGCTTAGTG
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----------------------------------------gtagcaaatcctatcaa----tat-tatcttcatatccaccttt--------cctggtatacaatcaaatgaaaagaaaaagat-tctaccaaaccagGTTTTTATGGAAATAAGCTGTCCTGATGGTGGAAATGGAGGAAGGAATAACTCTTCCCTAGCAACTCACGAGGAAATTCATCCAACCGGGATGATAAGTG
upper sequence: GLYMA13G26190.1 (Glycine max), 3'ss of exon 21
lower sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 17
---------gtcattatagatttttcttctgtatgttgtatacttgtttggagttattctaataaaggcatatctatctttatagagatgagtgatatgaacttaggatttgtcaaatttttaagtgttatgtatttttcttatcagGTTTTTATGGAAATTAGATGTCCTGATGGTGGGGATGGTGGAAGAAAAAGTTCATTTCCTGCAACTCACGAAGAAATTCATCCAACAGTAATGCTTAGTG
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gtgagtccaggttttccacacatttcttttgttt-ttacaatcatattttgacctttgctgttttag-caaatctgttatt--agatgtagttgctggatgccaaata-----cgagctgctgattgatttatatttgtcatcctagGTTTATATGGAAATAAGATGTCCTGATGGTAGCGATGGAGGAAGGAGGAATATTTTTCCTGCAACTCATGAAGAGATCCATCCCACTGGAATGCTCAGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193380922|gb|FK346485.1|FK346485EST: CATTTGAGCAG GTTTTTATGGAAATTAGATGTCCTGATGGTGGGGATGGTGGAAG-AAAAGT
genomic: CATTTGAGCAGgtcattatag ... ttcttatcagGTTTTTATGGAAATTAGATGTCCTGATGGTGGGGATGGTGGAAGAAAAAGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatatgaacttaggatttgtcaaatttttaagtgttatgtatttttcttatcagGTTTTTATGGAAATTAGATGTCCTGATGGTGGGGATGGTGGAAGAAAAAGTTCATTTCCTGCAACTCACGAAGAAATTCATCCAACAGTAATGCTTAGTG
tttttcttatc CT-rich tract
aaatttttaagtgtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcattatagatttttcttctgtatgttgtatacttgtttggagttattctaataaaggcatatctatctttatagagatgagtgatatgaacttaggatttgtcaaatttttaagtgttatgtatttttcttatcagGTTTTTATGGAAATTAGATGTCCTGATGGTGGGGATGGTGGAAGAAAAAGTTCATTTCCTGCAACTCACGAAGAAATTCATCCAACAGTAATGCTTAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA