Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   		33  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgttcctgtagcccccatcccacatccctaaaaaaactgtccctgtgattatcataagttatttgcttttttttttattattattattttgacatgctaggtaagtttcatgctttgtggatgagaatacaggatggcaactttgatgtttggtacagttgacaatgttcattagtttctttgttgacacctcagGTTTACTTTCTTGCATGCCCCCAAGGAAATGCGCAGTAAAAATGTGGAAGCTTTGCGTACACTGTTGGTTCTATGTGACTCAGACATGAACGCTCTTCAA

Basic information

species Glycine max
transcript GLYMA13G17610.1
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 21
lower sequence: LOC_Os07g37750.1 (Oryza sativa), 3'ss of exon 18
gtatatgttcctgtagcccccatcccacatccctaaaaaaactgtccctgtgattatcataagttatttgcttttttttttattattattattttgacatgctaggtaagtttcatgctttgtggatgagaatacaggatggcaactttgatgtttggtacagttgacaatgttcattagtttctttgttgacacct--cagGTTTACTTTCTTGCATGCCCCCAAGGAAATGCGCAGTAAAAATGTGGAAGCTTTGCGTACACTGTTGGTTCTATGTGACTCAGACATGAACGCTCTTCAA
                                 |||  ||| | |   |   |||     |  |    || || || ||     |     | ||  | ||| ||  |   |||  ||  || |  ||     |  | ||  | || |  | |   |  ||    || |||| |    | |||||||| || ||   |  ||||||||| || |||||||| || ||||||||||| ||||||||||| || ||||| || || ||  | |   ||  |||| |||| ||| | ||| | |||
--------------------------------gtaagcaaattattttttctatttatggatatacactggttgttcttgggcaa-----acttctatatg-taaattcatttattgtctttttaat-----tttatgaatgtaa-tgcgctaagttatatgaatg-caatatcttat-gtttctttcttaaccttttgcagGTTTACATTTTTGCATGCTCCTAAGGAAATGCGTAGTAAAAATGTTGAGGCTTTACGGACCCTCCTTGGCTTAGCTGACACAGATATGGATGCTTTGCAA

upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 21
lower sequence: GRMZM2G335287_T01 (Zea mays), 3'ss of exon 19
gtatatgttcctgtagcccccatcccacatccctaaaaaaactgtccctgtgattatcataagttatttgcttttttttttattattattattttgacatgctaggtaagtttcatg---ctttgtggatgagaatacaggatggcaactttgatgt-ttggtacagttgacaatgttcattagtttctttgttgacacct--cagGTTTACTTTCTTGCATGCCCCCAAGGAAATGCGCAGTAAAAATGTGGAAGCTTTGCGTACACTGTTGGTTCTATGTGACTCAGACATGAACGCTCTTCAA
                                                                                                      |||||   |    ||    | |    ||||    || | ||   |  ||| || | |   ||    | | |||| |      ||  ||  |   |   |  ||||||||| || |||||||| |||||||| ||||| ||||||||||| || ||  ||   || ||  | | | ||  |||| | || ||| | ||| | |||
-----------------------------------------------------------------------------------------------------gtaggtttatcctttgaacttcttcatatgatgcaactgcata-tacttttcatatatcaatatgaat-ataatgctacccttttcgttcataatcgttttgcagGTTTACATTTTTGCATGCTCCCAAGGAGATGCGTAGTAAAAATGTCGAGGCACTGAAGACTCTTCTTGGTTTAGCTGACACTGATATGGATGCTTTACAA

upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 21
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 3'ss of exon 21
gtatatgttcctgtagcccccatcccacatccctaaaaaaactgtccctgtgattatcataagttatttgcttttttttttattattattattttgacatgctaggtaagtttcatgctttgtggatgagaatacaggatggcaactttgatgtttggtacagttgacaatgttcattagtttctttgttgacacctcagGTTTACTTTCTTGCATGCCCCCAAGGAAATGCGCAGTAAAAATGTGGAAGCTTTGCGTACACTGTTGGTTCTATGTGACTCAGACATGAACGCTCTTCAA
                                                                                                || |  ||| | |  |  |  | ||||  |  || ||    | |      ||   |  ||  | |  || || ||    | ||   | ||   |   | | ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || || || ||| ||| ||||||||||||||| |  ||| ||||||||
-----------------------------------------------------------------------------------------------aacttattagttca--tgaagacattgtata-aagtattattgctatttgtttatctaattacttc--ttaaccataactaatatgcttttaagttttatcccagATTTACTTTCTTGCATGCCCCAAAGGAAATGCGCAGTAAAAATGTGGAAGCATTACGAACTCTGCTGGCTCTATGTGACTCAGAGACCAACTCTCTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgatgtttggtacagttgacaatgttcattagtttctttgttgacacctcagGTTTACTTTCTTGCATGCCCCCAAGGAAATGCGCAGTAAAAATGTGGAAGCTTTGCGTACACTGTTGGTTCTATGTGACTCAGACATGAACGCTCTTCAA
                                         tgttgac  putative branch site (score: 3)
                              attagttt  TA-rich tract