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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaattcatttgttactgtttgttgctttcaaatattaattgttaataagtttatatttttccctcttttgattgcatagGTGCAATGCCCACTTGAGGTCATTAATCTCCACCCAAGCAGGGATGTTGCCGTTCTTGACTTCTCCTACAAGTTTGGTAACGATATG

Basic information

species Glycine max
transcript GLYMA12G30520.1
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G30520.1 (Glycine max), 3'ss of exon 21
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 21
----------------------gtgagaattcatttgtta--ctgtttgttgctttcaaatattaattgttaataagtttatatttttccctcttttgattgcatagGTGCAATGCCCACTTGAGGTCATTAATCTCCACCCAAGCAGGGATGTTGCCGTTCTTGACTTCTCCTACAAGTTTGGTAACGATATG
                      || |    | | |  | |  || || | |   || |   ||||    ||| ||   || |  | |    ||||| | ||   |||||||||||||||||||| ||||| ||||| |  |||||||||||||| || |||||||| ||||| ||||||||||| | |  |  |
gtgaagcctccttgttatccttgtaactgattactaataaatctcttagctttctttagtgattataacttattattctttttatgtctgttctttcggttatgtagGTGCAATGCCCACTTGAAGTCATGAATCTTCGTCCAAGCAGGGATGTAGCTGTTCTTGATTTCTCGTACAAGTTTGGAACCTCTTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4283486|gb|AI440662.1|AI440662
EST:     TGAAGATGGAGCTCTCTCTAGTACCAGAAACTATACCTCCCCGGGCACAA                         GTGCAATGCCCACTTGAGGTCATTAATCTCCACCCAAGCAGGGATGTTGCC
genomic: TGAAGATGGAGCTCTCTCTAGTACCAGAAACTATACCTCCCCGGGCACAAgtgagaattc ... gattgcatagGTGCAATGCCCACTTGAGGTCATTAATCTCCACCCAAGCAGGGATGTTGCC
EST: gi|298199238|gb|HO042601.1|HO042601
EST:     TGAAGATGGAGCTCTCTCTAGTACCAGAAACTATACCTCCCCGGGCACAA                         GTGCAATGCCCACTTGAGGTCATTAATCTCCACCCAAGCAGGGATGTTGCC
genomic: TGAAGATGGAGCTCTCTCTAGTACCAGAAACTATACCTCCCCGGGCACAAgtgagaattc ... gattgcatagGTGCAATGCCCACTTGAGGTCATTAATCTCCACCCAAGCAGGGATGTTGCC
EST: gi|151404341|gb|EV274151.1|EV274151
EST:     TGAAGATGGAGCTCTCTCTAGTACCAGAAACTATACCTCCCCGGGCACAA                         GTGCAATGCCCACTTGAGGTCATTAATCTCCACCCAAGCAGGGATGTTGCC
genomic: TGAAGATGGAGCTCTCTCTAGTACCAGAAACTATACCTCCCCGGGCACAAgtgagaattc ... gattgcatagGTGCAATGCCCACTTGAGGTCATTAATCTCCACCCAAGCAGGGATGTTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcaaatattaattgttaataagtttatatttttccctcttttgattgcatagGTGCAATGCCCACTTGAGGTCATTAATCTCCACCCAAGCAGGGATGTTGCCGTTCTTGACTTCTCCTACAAGTTTGGTAACGATATG
                         tttatatttttccctc  CT-rich tract
     aaatattaattgttaa  TA-rich tract